A B C D E F G H I J K L M N O P Q R S T U V W X Y _ 

A

about - Variable in class org.purl.wf4ever.roevo.jaxb.VersionableResource
 
about - Variable in class org.w3._1999._02._22_rdf_syntax_ns.Description
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Blocking
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.CrossProduct
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStackLayer
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DotProduct
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputActivityPort
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputPortBinding
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputProcessorPort
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputWorkflowPort
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputPortBinding
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputWorkflowPort
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.SeeAlsoType
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
 
about - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
 
AbstractActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
AbstractActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.AbstractActivityParser
 
AbstractCloneable - Class in uk.org.taverna.scufl2.api.common
 
AbstractCloneable() - Constructor for class uk.org.taverna.scufl2.api.common.AbstractCloneable
 
AbstractCloneable.Cloning - Class in uk.org.taverna.scufl2.api.common
 
AbstractCloneable.Cloning(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.api.common.AbstractCloneable.Cloning
Construct a Cloning helper.
AbstractCloneable.CopyVisitor - Class in uk.org.taverna.scufl2.api.common
 
AbstractCloneable.CopyVisitor(AbstractCloneable.Cloning) - Constructor for class uk.org.taverna.scufl2.api.common.AbstractCloneable.CopyVisitor
 
AbstractConfigBean - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for AbstractConfigBean complex type.
AbstractConfigBean() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AbstractConfigBean
 
AbstractDepthPort - Class in uk.org.taverna.scufl2.api.port
Abstract implementation of a Port that has a depth property.
AbstractDepthPort() - Constructor for class uk.org.taverna.scufl2.api.port.AbstractDepthPort
Constructs an AbstractDepthPort with a random UUID as the name.
AbstractDepthPort(String) - Constructor for class uk.org.taverna.scufl2.api.port.AbstractDepthPort
Constructs an AbstractDepthPort with the specified name.
AbstractExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
AbstractExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.AbstractExtensionParser
 
AbstractGranularDepthPort - Class in uk.org.taverna.scufl2.api.port
Abstract implementation of a Port that has a granular depth property.
AbstractGranularDepthPort() - Constructor for class uk.org.taverna.scufl2.api.port.AbstractGranularDepthPort
Constructs an AbstractGranularDepthPort with a random UUID as the name.
AbstractGranularDepthPort(String) - Constructor for class uk.org.taverna.scufl2.api.port.AbstractGranularDepthPort
Constructs an AbstractGranularDepthPort with the specified name.
AbstractNamed - Class in uk.org.taverna.scufl2.api.common
Abstract implementation of a Named WorkflowBean.
AbstractNamed() - Constructor for class uk.org.taverna.scufl2.api.common.AbstractNamed
Constructs a Named WorkflowBean with a random UUID as the name.
AbstractNamed(String) - Constructor for class uk.org.taverna.scufl2.api.common.AbstractNamed
Constructs a Named WorkflowBean with the specified name.
AbstractParser - Class in uk.org.taverna.scufl2.rdfxml
 
AbstractParser() - Constructor for class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
AbstractParser(ThreadLocal<ParserState>) - Constructor for class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
AbstractProcessorExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
AbstractProcessorExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.AbstractProcessorExtensionParser
 
AbstractprocessorType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for abstractprocessorType complex type.
AbstractprocessorType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.AbstractprocessorType
 
AbstractRevisioned - Class in uk.org.taverna.scufl2.api.common
 
AbstractRevisioned() - Constructor for class uk.org.taverna.scufl2.api.common.AbstractRevisioned
 
AbstractRevisioned(String) - Constructor for class uk.org.taverna.scufl2.api.common.AbstractRevisioned
 
AbstractTextual - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for AbstractTextual complex type.
AbstractTextual() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AbstractTextual
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.activity.Activity
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
accept(Visitor, HashSet<Revision>) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
accept(Visitor) - Method in interface uk.org.taverna.scufl2.api.common.WorkflowBean
Accepts a Visitor to this WorkflowBean.
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.core.DataLink
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.core.Processor
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.core.Workflow
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStack
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStackLayer
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.CrossProduct
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.DotProduct
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.IterationStrategyStack
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.port.AbstractDepthPort
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.port.OutputWorkflowPort
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorPortBinding
 
accept(Visitor) - Method in class uk.org.taverna.scufl2.api.profiles.Profile
 
acceptsHeaderValue - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
action - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.CoordinationType
 
ActionType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for actionType complex type.
ActionType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ActionType
 
activateConfiguration - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
 
Activities - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of activities.
Activities() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activities
 
activities - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
 
Activity - Class in uk.org.taverna.scufl2.api.activity
An Activity specifies a way of implementing a Processor within a Workflow.
Activity() - Constructor for class uk.org.taverna.scufl2.api.activity.Activity
Constructs an Activity with a random UUID as the name.
Activity(String) - Constructor for class uk.org.taverna.scufl2.api.activity.Activity
Constructs an Activity with the specified name.
Activity - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Activity() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
 
activity - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activities
 
Activity - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
An activity is the link between a processor and the actual service.
Activity() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
 
Activity.InputActivityPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Activity.InputActivityPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Activity.InputActivityPort
 
Activity.OutputActivityPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Activity.OutputActivityPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Activity.OutputActivityPort
 
ACTIVITY_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.ApiConsomerActivityParser
 
ACTIVITY_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BeanshellActivityParser
 
ACTIVITY_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomartActivityParser
 
ACTIVITY_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.RshellActivityParser
 
ACTIVITY_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SpreadsheetActivityParser
 
ACTIVITY_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
 
ACTIVITY_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
 
ACTIVITY_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.t23activities.XPathActivityParser
 
ActivityInputPorts - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ActivityInputPorts complex type.
ActivityInputPorts() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputPorts
 
ActivityInputs - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ActivityInputs complex type.
ActivityInputs() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs
 
activityInputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
ActivityInputs.Entry - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for anonymous complex type.
ActivityInputs.Entry() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
 
ActivityOutputPorts - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ActivityOutputPorts complex type.
ActivityOutputPorts() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityOutputPorts
 
ActivityPort - Interface in uk.org.taverna.scufl2.api.port
A Port that specifies the data consumed or produced by an Activity.
ActivityPortDefinitionBean - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ActivityPortDefinitionBean complex type.
ActivityPortDefinitionBean() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean
 
ActivityPortDefinitionBean.MimeTypes - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for anonymous complex type.
ActivityPortDefinitionBean.MimeTypes() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
 
activityPosition - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
 
add(T) - Method in class uk.org.taverna.scufl2.api.common.NamedSet
Adds the Named WorkflowBean and returns true iff the set did not already contain an element with the same name.
addition - Variable in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification.HasChange
 
addMapping(Object, WorkflowBean) - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
addResource(String, String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
addResource(byte[], String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
addResource(Document, String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
addResource(InputStream, String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
addResource(URI, String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
addResourceUsingOutputStream(String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
addRevisions(Revisioned, String, WorkflowBundle) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
addWithUniqueName(T) - Method in class uk.org.taverna.scufl2.api.common.NamedSet
Adds the Named WorkflowBean with a unique name if the name already exist.
AgreementMethodType - Class in org.w3._2001._04.xmlenc
Java class for AgreementMethodType complex type.
AgreementMethodType() - Constructor for class org.w3._2001._04.xmlenc.AgreementMethodType
 
algorithm - Variable in class org.w3._2000._09.xmldsig.CanonicalizationMethodType
 
algorithm - Variable in class org.w3._2000._09.xmldsig.DigestMethodType
 
algorithm - Variable in class org.w3._2000._09.xmldsig.SignatureMethodType
 
algorithm - Variable in class org.w3._2000._09.xmldsig.TransformType
 
algorithm - Variable in class org.w3._2001._04.xmlenc.AgreementMethodType
 
algorithm - Variable in class org.w3._2001._04.xmlenc.EncryptionMethodType
 
Algorithm - Class in uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest
 
Algorithm() - Constructor for class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.Algorithm
 
Algorithm(String, String) - Constructor for class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.Algorithm
 
allRows - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
alternate - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
AlternateType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for alternateType complex type.
AlternateType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.AlternateType
 
AnnotatedGranularDepthPort - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for AnnotatedGranularDepthPort complex type.
AnnotatedGranularDepthPort() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedGranularDepthPort
 
AnnotatedGranularDepthPorts - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of annotated ports that have both depth and granular depth.
AnnotatedGranularDepthPorts() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedGranularDepthPorts
 
AnnotatedPort - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for AnnotatedPort complex type.
AnnotatedPort() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedPort
 
AnnotatedPorts - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of annotated ports.
AnnotatedPorts() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedPorts
 
Annotation - Class in uk.org.taverna.scufl2.api.annotation
An annotation of a WorkflowBean.
Annotation(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.api.annotation.Annotation
 
Annotation() - Constructor for class uk.org.taverna.scufl2.api.annotation.Annotation
 
annotation(Annotation) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
AnnotationAssertionImpl - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for AnnotationAssertionImpl complex type.
AnnotationAssertionImpl() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl
 
AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for anonymous complex type.
AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
 
annotationAssertions - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain.NetSfTavernaT2AnnotationAnnotationChainImpl
 
annotationBean - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
 
AnnotationBean - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for AnnotationBean complex type.
AnnotationBean() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationBean
 
AnnotationChain - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Chain of annotations.
AnnotationChain() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
 
AnnotationChain.NetSfTavernaT2AnnotationAnnotationChainImpl - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for anonymous complex type.
AnnotationChain.NetSfTavernaT2AnnotationAnnotationChainImpl() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain.NetSfTavernaT2AnnotationAnnotationChainImpl
 
annotationChainOrAnnotationChain22 - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Annotations
 
annotations - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
 
annotations - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedGranularDepthPort
 
annotations - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedPort
 
Annotations - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of annotation chains
Annotations() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Annotations
 
annotations - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
 
annotations - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
 
annotationsFor(Child<?>) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
annotationsFor(WorkflowBean, WorkflowBundle) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
any - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Relationship
 
any - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.RootFile
 
any - Variable in class org.w3._1999._02._22_rdf_syntax_ns.Description
 
any - Variable in class org.w3._1999._02._22_rdf_syntax_ns.RDF
 
any - Variable in class org.w3._2001._04.xmlenc.ReferenceType
 
any - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
 
any - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomartType
 
any - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationBean
 
any - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyCategory
 
any - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyServiceType
 
any - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
 
any5 - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
 
any7 - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
 
any9 - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
 
anyOrRelationship - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Relationships
 
anyOrRootFile - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.RootFiles
 
ApiConsomerActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
ApiConsomerActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.ApiConsomerActivityParser
 
ApiConsumerConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ApiConsumerConfig complex type.
ApiConsumerConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
apiConsumerDescription - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
ApiConsumerExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
ApiConsumerExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.ApiConsumerExtensionParser
 
apiConsumerName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
ApiConsumerParameter - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
 
ApiConsumerParameter(ApiConsumerParameterType) - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameter
 
ApiConsumerParameter() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameter
 
ApiConsumerParameterDimensions - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ApiConsumerParameterDimensions complex type.
ApiConsumerParameterDimensions() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterDimensions
 
ApiConsumerParameterNames - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ApiConsumerParameterNames complex type.
ApiConsumerParameterNames() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterNames
 
ApiConsumerParameterType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for parameterType complex type.
ApiConsumerParameterType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
 
ApiConsumerParameterTypes - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ApiConsumerParameterTypes complex type.
ApiConsumerParameterTypes() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterTypes
 
ApiconsumerType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for apiconsumerType complex type.
ApiconsumerType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
 
APPLICATION_RDF_XML - Static variable in class uk.org.taverna.scufl2.rdfxml.RDFXMLReader
 
APPLICATION_VND_TAVERNA_SCUFL2_WORKFLOW_BUNDLE - Static variable in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
APPLICATION_VND_TAVERNA_SCUFL2_WORKFLOW_BUNDLE - Static variable in class uk.org.taverna.scufl2.rdfxml.RDFXMLReader
 
APPLICATION_VND_TAVERNA_SCUFL_XML - Static variable in class uk.org.taverna.scufl2.translator.scufl.ScuflReader
 
APPLICATION_VND_TAVERNA_T2FLOW_XML - Static variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
ArbitraryWsdlType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for arbitraryWsdlType complex type.
ArbitraryWsdlType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
 
arraytype - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
 
arraytype - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
 
ArraytypeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for arraytypeType complex type.
ArraytypeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
 
articleName - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
 
ArticleNameType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for articleNameType complex type.
ArticleNameType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ArticleNameType
 
articleNameUsedByService - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
 
artifact - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArtifactType
 
artifact - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DependenciesType
 
artifact - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Raven
 
artifactDependencies - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
ArtifactDependencies - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ArtifactDependencies complex type.
ArtifactDependencies() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ArtifactDependencies
 
artifactDependencies - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
 
artifactId - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
 
ArtifactType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for artifactType complex type.
ArtifactType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ArtifactType
 
author - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
 
Author - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for Author complex type.
Author() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Author
 
authorityName - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
 
authorityName - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
 
authorityName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
 
AuthorityNameType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for authorityNameType complex type.
AuthorityNameType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.AuthorityNameType
 

B

backoff - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
 
BACKOFF_FACTOR - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser.Defaults
 
backoffFactor - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
 
base - Variable in class org.w3._1999._02._22_rdf_syntax_ns.RDF
 
basetype - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
 
BasetypeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for basetypeType complex type.
BasetypeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
 
BasicArtifact - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for BasicArtifact complex type.
BasicArtifact() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
 
BeanshellActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
BeanshellActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BeanshellActivityParser
 
BeanshellConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Configuration for the Beanshell activity.
BeanshellConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
 
BeanshellExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
BeanshellExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.BeanshellExtensionParser
 
beanshellinput - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellinputlistType
 
beanshellinputlist - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
 
BeanshellinputlistType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for beanshellinputlistType complex type.
BeanshellinputlistType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellinputlistType
 
BeanshellinputType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for beanshellinputType complex type.
BeanshellinputType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
 
beanshelloutput - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputlistType
 
beanshelloutputlist - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
 
BeanshelloutputlistType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for beanshelloutputlistType complex type.
BeanshelloutputlistType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputlistType
 
BeanshelloutputType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for beanshelloutputType complex type.
BeanshelloutputType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
 
BeanshellType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for beanshellType complex type.
BeanshellType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
 
binary - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
 
binary - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
 
binary - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
 
bindActivity - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
 
bindActivityToProcessorByMatchingPorts(Activity, Processor) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
bindActivityToProcessorByMatchingPorts(ProcessorBinding) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
bindInputActivityPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputPortBinding
 
bindInputProcessorPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputPortBinding
 
bindOutputActivityPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputPortBinding
 
bindOutputProcessorPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputPortBinding
 
bindProcessor - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
 
BiomartActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
BiomartActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomartActivityParser
 
BioMartConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for BioMartConfig complex type.
BioMartConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
 
BioMartConfig.MartService - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for anonymous complex type.
BioMartConfig.MartService() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig.MartService
 
BiomartExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
BiomartExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.BiomartExtensionParser
 
BiomartType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for biomartType complex type.
BiomartType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomartType
 
BiomobyActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
BiomobyActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomobyActivityParser
 
BioMobyCategory - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for BioMobyCategory complex type.
BioMobyCategory() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyCategory
 
BioMobyConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for BioMobyConfig complex type.
BioMobyConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
 
BioMobyEntry - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for BioMobyEntry complex type.
BioMobyEntry() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyEntry
 
BiomobyExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
BiomobyExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.BiomobyExtensionParser
 
BioMobyObjectConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for BioMobyObjectConfig complex type.
BioMobyObjectConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
 
BiomobyobjectType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for biomobyobjectType complex type.
BiomobyobjectType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
 
BiomobyParameter - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
 
BiomobyParameter(BiomobyParameterType) - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyParameter
 
BiomobyParameter() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyParameter
 
BiomobyParameterType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for ParameterType complex type.
BiomobyParameterType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
 
BioMobyParserConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for BioMobyParserConfig complex type.
BioMobyParserConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
 
BiomobyparserType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for biomobyparserType complex type.
BiomobyparserType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
 
BioMobySecondaries - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for BioMobySecondaries complex type.
BioMobySecondaries() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobySecondaries
 
BioMobyServiceType - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for BioMobyServiceType complex type.
BioMobyServiceType() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyServiceType
 
BiomobywsdlType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for biomobywsdlType complex type.
BiomobywsdlType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
 
block - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Blocking
 
Blocking - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for Blocking complex type.
Blocking() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Blocking
 
blocking - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Control
 
BlockingControlLink - Class in uk.org.taverna.scufl2.api.core
A ControlLink that blocks a Processor from starting until another Processor has finished.
BlockingControlLink() - Constructor for class uk.org.taverna.scufl2.api.core.BlockingControlLink
Constructs an unconnected BlockingControlLink.
BlockingControlLink(Processor, Processor) - Constructor for class uk.org.taverna.scufl2.api.core.BlockingControlLink
Constructs a BlockingControlLink with the specified blocked and control Processors.
boring - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
breakpoint - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
 
breakpoint - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
 
bundleString(WorkflowBundle) - Method in class uk.org.taverna.scufl2.api.io.structure.StructureWriter
 
bundleUUID(WorkflowBundle) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 

C

canHandle(Class) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.AbstractProcessorExtensionParser
 
canHandle(Class) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.ApiConsumerExtensionParser
 
canHandle(Class) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.BeanshellExtensionParser
 
canHandle(Class) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.BiomartExtensionParser
 
canHandle(Class) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.BiomobyExtensionParser
 
canHandle(Class) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.LocalExtensionParser
 
canHandle(Class) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.RshellExtensionParser
 
canHandle(Class) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.SoaplabExtensionParser
 
canHandle(Class) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.StringConstantExtensionParser
 
canHandle(Class) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.WsdlExtensionParser
 
canHandle(Class) - Method in interface uk.org.taverna.scufl2.translator.scufl.ScuflExtensionParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.ApiConsomerActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BeanshellActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomartActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomobyActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.DataflowActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.RshellActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SoaplabActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SpreadsheetActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.StringConstantActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLXMLSplitterParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ErrorBounceParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.FailoverParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.InvokeParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.LoopParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ParallelizeParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
 
canHandlePlugin(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.XPathActivityParser
 
canHandlePlugin(URI) - Method in interface uk.org.taverna.scufl2.translator.t2flow.T2Parser
 
canonicalizationMethod - Variable in class org.w3._2000._09.xmldsig.SignedInfoType
 
CanonicalizationMethodType - Class in org.w3._2000._09.xmldsig
Java class for CanonicalizationMethodType complex type.
CanonicalizationMethodType() - Constructor for class org.w3._2000._09.xmldsig.CanonicalizationMethodType
 
carriedKeyName - Variable in class org.w3._2001._04.xmlenc.EncryptedKeyType
 
category - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
 
Change - Class in org.purl.wf4ever.roevo.jaxb
Java class for Change complex type.
Change() - Constructor for class org.purl.wf4ever.roevo.jaxb.Change
 
ChangeSpecification - Class in org.purl.wf4ever.roevo.jaxb
Java class for anonymous complex type.
ChangeSpecification() - Constructor for class org.purl.wf4ever.roevo.jaxb.ChangeSpecification
 
changeSpecification - Variable in class org.purl.wf4ever.roevo.jaxb.VersionableResource.WasChangedBy
 
ChangeSpecification.HasChange - Class in org.purl.wf4ever.roevo.jaxb
Java class for anonymous complex type.
ChangeSpecification.HasChange() - Constructor for class org.purl.wf4ever.roevo.jaxb.ChangeSpecification.HasChange
 
CHARSET - Static variable in class uk.org.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
 
charsetName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
 
charsetName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
 
checkCorrectness(WorkflowBean, boolean, CorrectnessValidationListener) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessValidator
 
checkStructure(WorkflowBundle, StructuralValidationListener) - Method in class uk.org.taverna.scufl2.validation.structural.StructuralValidator
 
checkStructure(Workflow, StructuralValidationListener) - Method in class uk.org.taverna.scufl2.validation.structural.StructuralValidator
 
Child<T extends WorkflowBean> - Interface in uk.org.taverna.scufl2.api.common
A WorkflowBean that is the child of another WorkflowBean.
cipherData - Variable in class org.w3._2001._04.xmlenc.EncryptedType
 
CipherDataType - Class in org.w3._2001._04.xmlenc
Java class for CipherDataType complex type.
CipherDataType() - Constructor for class org.w3._2001._04.xmlenc.CipherDataType
 
cipherReference - Variable in class org.w3._2001._04.xmlenc.CipherDataType
 
CipherReferenceType - Class in org.w3._2001._04.xmlenc
Java class for CipherReferenceType complex type.
CipherReferenceType() - Constructor for class org.w3._2001._04.xmlenc.CipherReferenceType
 
cipherValue - Variable in class org.w3._2001._04.xmlenc.CipherDataType
 
classloader - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DependenciesType
 
classLoaderSharing - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
classLoaderSharing - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
 
ClassLoaderSharing - Enum in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ClassLoaderSharing.
className - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
ClassType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for classType complex type.
ClassType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ClassType
 
clazz - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
 
clazz - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
 
clazz - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
 
clazz - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationBean
 
clazz - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dependencies
 
clazz - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
 
clazz - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
 
clazz - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
 
clear() - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
clearParserState() - Method in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
clearWorkflowData() - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
clone() - Method in class uk.org.taverna.scufl2.api.common.AbstractCloneable
 
clone() - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
clone() - Method in interface uk.org.taverna.scufl2.api.common.WorkflowBean
Create a deep clone of this bean.
clone() - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStack
 
clone() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.CrossProduct
 
clone() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.DotProduct
 
clone() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.IterationStrategyStack
 
clone() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
cloneIfNotInCache(T) - Method in class uk.org.taverna.scufl2.api.common.AbstractCloneable.Cloning
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.activity.Activity
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.common.AbstractCloneable
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.common.AbstractNamed
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.core.DataLink
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.core.Workflow
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStackLayer
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.port.AbstractDepthPort
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.port.AbstractGranularDepthPort
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorPortBinding
 
cloneInto(WorkflowBean, AbstractCloneable.Cloning) - Method in class uk.org.taverna.scufl2.api.profiles.Profile
 
cloneNode(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.AbstractCloneable.CopyVisitor
 
cloneOrOriginal(T) - Method in class uk.org.taverna.scufl2.api.common.AbstractCloneable.Cloning
 
cloneWorkflowBean(T) - Static method in class uk.org.taverna.scufl2.api.common.AbstractCloneable
 
close() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Close the OdfPackage after it is no longer needed.
CNT - Static variable in class uk.org.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
 
columnNames - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
columnRange - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
command - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
comparator() - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
compare(ProcessorBinding, ProcessorBinding) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools.BindingComparator
 
compare(Iterable, Iterable) - Method in class uk.org.taverna.scufl2.api.impl.IterableComparator
 
compare(T, T) - Method in class uk.org.taverna.scufl2.api.impl.NullSafeComparator
 
compareItems(Object, Object) - Method in class uk.org.taverna.scufl2.api.impl.IterableComparator
 
compareNulls(Object, Object) - Method in class uk.org.taverna.scufl2.api.impl.IterableComparator
 
compareObjects(Object, Object) - Static method in class uk.org.taverna.scufl2.api.impl.NullSafeComparator
Compare any two objects, null-safe.
compareTo(Object) - Method in class uk.org.taverna.scufl2.api.common.AbstractNamed
 
compareTo(Object) - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
 
compareTo(Object) - Method in class uk.org.taverna.scufl2.api.core.DataLink
 
complextype - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
 
complextype - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
 
complextypeOrArraytypeOrBasetype - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementsType
 
ComplextypeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for complextypeType complex type.
ComplextypeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
 
concatenate - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
 
condition - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.CoordinationType
 
Condition - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
A conditional link.
Condition() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Condition
 
condition - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Conditions
 
Conditions - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of conditional control links.
Conditions() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Conditions
 
conditions - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
 
ConditionStateType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for conditionStateType complex type.
ConditionStateType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionStateType
 
ConditionType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for conditionType complex type.
ConditionType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionType
 
conditionXML - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
 
configBean - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
 
ConfigBean - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ConfigBean complex type.
ConfigBean() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ConfigBean
 
configBean - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
 
configBeanURI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
Configurable - Interface in uk.org.taverna.scufl2.api.common
WorkflowBeans that can have a Configuration.
Configuration - Class in uk.org.taverna.scufl2.api.configurations
Configuration of a Configurable workflow bean.
Configuration() - Constructor for class uk.org.taverna.scufl2.api.configurations.Configuration
Constructs a Configuration with a random UUID as the name.
Configuration(String) - Constructor for class uk.org.taverna.scufl2.api.configurations.Configuration
Construct a Configuration with the specified name.
Configuration - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Configuration() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
 
configurationFor(Configurable, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
Returns the Configuration for a Configurable in the given Profile.
configurationForActivityBoundToProcessor(Processor, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
configurationsFor(Configurable, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
Returns the list of Configurations for a Configurable in the given Profile.
ConfigurationType - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
ConfigurationType() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.ConfigurationType
 
configure - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
 
connectionSettings - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
 
CONSTANT - Static variable in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
CONSTANT - Static variable in class uk.org.taverna.scufl2.translator.scufl.processorelement.StringConstantExtensionParser
 
CONSTANT - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.StringConstantActivityParser
 
CONSTANT_CONFIG - Static variable in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
constructor - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
 
Container - Class in org.oasis_open.names.tc.opendocument.xmlns.container
Java class for Container complex type.
Container() - Constructor for class org.oasis_open.names.tc.opendocument.xmlns.container.Container
 
Container.Encryption - Class in org.oasis_open.names.tc.opendocument.xmlns.container
Java class for anonymous complex type.
Container.Encryption() - Constructor for class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Encryption
 
Container.Relationships - Class in org.oasis_open.names.tc.opendocument.xmlns.container
Java class for anonymous complex type.
Container.Relationships() - Constructor for class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Relationships
 
Container.RootFiles - Class in org.oasis_open.names.tc.opendocument.xmlns.container
Java class for anonymous complex type.
Container.RootFiles() - Constructor for class org.oasis_open.names.tc.opendocument.xmlns.container.Container.RootFiles
 
Container.Signatures - Class in org.oasis_open.names.tc.opendocument.xmlns.container
Java class for anonymous complex type.
Container.Signatures() - Constructor for class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Signatures
 
contains(Object) - Method in class uk.org.taverna.scufl2.api.common.NamedSet
Return true if the NamedSet contains the given object, as compared using its Object.equals(Object) method.
contains(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Check existence of a file in the package.
containsName(String) - Method in class uk.org.taverna.scufl2.api.common.NamedSet
Return true if the NamedSet contains an element with the given name.
containsNestedWorkflow(Processor) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
Returns true if processor contains a nested workflow in any of its activities in any of its profiles.
containsNestedWorkflow(Processor, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
Returns true if processor contains a nested workflow in the specified profile.
content - Variable in class org.w3._2000._09.xmldsig.CanonicalizationMethodType
 
content - Variable in class org.w3._2000._09.xmldsig.DigestMethodType
 
content - Variable in class org.w3._2000._09.xmldsig.KeyInfoType
 
content - Variable in class org.w3._2000._09.xmldsig.KeyValueType
 
content - Variable in class org.w3._2000._09.xmldsig.ObjectType
 
content - Variable in class org.w3._2000._09.xmldsig.PGPDataType
 
content - Variable in class org.w3._2000._09.xmldsig.SignatureMethodType
 
content - Variable in class org.w3._2000._09.xmldsig.SignaturePropertyType
 
content - Variable in class org.w3._2000._09.xmldsig.TransformType
 
content - Variable in class org.w3._2001._04.xmlenc.AgreementMethodType
 
content - Variable in class org.w3._2001._04.xmlenc.EncryptionMethodType
 
content - Variable in class org.w3._2001._04.xmlenc.EncryptionPropertyType
 
content - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.AbstractprocessorType
 
content - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
 
content - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
 
content - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.HTTPHeaders.List
 
content - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
 
content - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathNamespaceMap.List
 
contentTypeForUpdates - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
Control - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Control() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Control
 
control - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
 
control - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Condition
 
ControlLink - Interface in uk.org.taverna.scufl2.api.core
A link between two workflow components where one component controls the other in some way.
controlLinksBlocking(Processor) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
controlLinksWaitingFor(Processor) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
coordination - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
 
CoordinationType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for coordinationType complex type.
CoordinationType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.CoordinationType
 
CorrectnessValidationListener - Interface in uk.org.taverna.scufl2.validation.correctness
 
CorrectnessValidator - Class in uk.org.taverna.scufl2.validation.correctness
 
CorrectnessValidator() - Constructor for class uk.org.taverna.scufl2.validation.correctness.CorrectnessValidator
 
CorrectnessVisitor - Class in uk.org.taverna.scufl2.validation.correctness
 
CorrectnessVisitor(boolean, CorrectnessValidationListener) - Constructor for class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
create() - Static method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
 
createAbstractConfigBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of AbstractConfigBean
createAbstractConfigBean(AbstractConfigBean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<AbstractConfigBean>}
createAbstractprocessor(AbstractprocessorType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<AbstractprocessorType>}
createAbstractprocessorType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of AbstractprocessorType
createAction(ActionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ActionType>}
createActionType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ActionType
createActivities() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Activities
createActivity() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Activity
createActivity() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Activity
createActivityFromProcessor(Processor, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
createActivityInputActivityPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Activity.InputActivityPort
createActivityInputPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ActivityInputPorts
createActivityInputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ActivityInputs
createActivityInputsEntry() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ActivityInputs.Entry
createActivityOutputActivityPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Activity.OutputActivityPort
createActivityOutputPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ActivityOutputPorts
createActivityPortDefinitionBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ActivityPortDefinitionBean
createActivityPortDefinitionBeanAllowsLiteralValues(Boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<Boolean>}
createActivityPortDefinitionBeanDepth(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<BigInteger>}
createActivityPortDefinitionBeanGranularDepth(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<BigInteger>}
createActivityPortDefinitionBeanHandledReferenceSchemes(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<String>}
createActivityPortDefinitionBeanMimeTypes() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
createActivityPortDefinitionBeanMimeTypes(ActivityPortDefinitionBean.MimeTypes) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
createActivityPortDefinitionBeanName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<String>}
createActivityPortDefinitionBeanTranslatedElementType(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<String>}
createActivityPortsFromProcessor(Activity, Processor) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
createAgreementMethod(AgreementMethodType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<AgreementMethodType>}
createAgreementMethodType() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of AgreementMethodType
createAgreementMethodTypeKANonce(byte[]) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<byte[]>}
createAgreementMethodTypeOriginatorKeyInfo(KeyInfoType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<KeyInfoType>}
createAgreementMethodTypeRecipientKeyInfo(KeyInfoType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<KeyInfoType>}
createAlternate(AlternateType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<AlternateType>}
createAlternateType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of AlternateType
createAnnotatedGranularDepthPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of AnnotatedGranularDepthPort
createAnnotatedGranularDepthPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of AnnotatedGranularDepthPorts
createAnnotatedPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of AnnotatedPort
createAnnotatedPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of AnnotatedPorts
createAnnotationAssertionImpl() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of AnnotationAssertionImpl
createAnnotationAssertionImplNetSfTavernaT2AnnotationAnnotationAssertionImpl() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
createAnnotationBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of AnnotationBean
createAnnotationChain() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of AnnotationChain
createAnnotationChainNetSfTavernaT2AnnotationAnnotationChainImpl() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
createAnnotations() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Annotations
createAnnotationsAnnotationChain(AnnotationChain) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<AnnotationChain>}
createAnnotationsAnnotationChain22(AnnotationChain) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<AnnotationChain>}
createApiconsumer(ApiconsumerType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ApiconsumerType>}
createApiConsumerConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ApiConsumerConfig
createApiConsumerParameter(ApiConsumerParameterType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ApiConsumerParameter}
createApiConsumerParameterDimensions() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ApiConsumerParameterDimensions
createApiConsumerParameterNames() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ApiConsumerParameterNames
createApiConsumerParameterType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ApiConsumerParameterType
createApiConsumerParameterTypes() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ApiConsumerParameterTypes
createApiconsumerType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ApiconsumerType
createArbitrarywsdl(ArbitraryWsdlType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ArbitraryWsdlType>}
createArbitraryWsdlType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ArbitraryWsdlType
createArraytype(ArraytypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ArraytypeType>}
createArraytypeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ArraytypeType
createArticleName(ArticleNameType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ArticleNameType>}
createArticleNameType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ArticleNameType
createArtifact(ArtifactType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ArtifactType>}
createArtifactDependencies() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ArtifactDependencies
createArtifactType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ArtifactType
createAuthor() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Author
createAuthorityName(AuthorityNameType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<AuthorityNameType>}
createAuthorityNameType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of AuthorityNameType
createBasetype(BasetypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<BasetypeType>}
createBasetypeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BasetypeType
createBasicArtifact() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BasicArtifact
createBeanshell(BeanshellType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<BeanshellType>}
createBeanshellConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BeanshellConfig
createBeanshellinput(BeanshellinputType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<BeanshellinputType>}
createBeanshellinputlist(BeanshellinputlistType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<BeanshellinputlistType>}
createBeanshellinputlistType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BeanshellinputlistType
createBeanshellinputType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BeanshellinputType
createBeanshelloutput(BeanshelloutputType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<BeanshelloutputType>}
createBeanshelloutputlist(BeanshelloutputlistType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<BeanshelloutputlistType>}
createBeanshelloutputlistType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BeanshelloutputlistType
createBeanshelloutputType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BeanshelloutputType
createBeanshellType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BeanshellType
createBiomart(BiomartType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<BiomartType>}
createBioMartConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BioMartConfig
createBioMartConfigMartService() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BioMartConfig.MartService
createBiomartType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BiomartType
createBioMobyCategory() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BioMobyCategory
createBioMobyConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BioMobyConfig
createBioMobyEntry() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BioMobyEntry
createBiomobyobject(BiomobyobjectType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<BiomobyobjectType>}
createBioMobyObjectConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BioMobyObjectConfig
createBiomobyobjectType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BiomobyobjectType
createBiomobyParameter(BiomobyParameterType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BiomobyParameter}
createBiomobyParameterType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BiomobyParameterType
createBiomobyparser(BiomobyparserType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<BiomobyparserType>}
createBioMobyParserConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BioMobyParserConfig
createBiomobyparserType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BiomobyparserType
createBioMobySecondaries() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BioMobySecondaries
createBioMobyServiceType() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of BioMobyServiceType
createBiomobywsdl(BiomobywsdlType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<BiomobywsdlType>}
createBiomobywsdlType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of BiomobywsdlType
createBlocking() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Blocking
createBundle() - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Create a new WorkflowBundle with a default workflow and profile.
createCanonicalizationMethod(CanonicalizationMethodType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<CanonicalizationMethodType>}
createCanonicalizationMethodType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of CanonicalizationMethodType
createChange() - Method in class org.purl.wf4ever.roevo.jaxb.ObjectFactory
Create an instance of Change
createChangeSpecification() - Method in class org.purl.wf4ever.roevo.jaxb.ObjectFactory
Create an instance of ChangeSpecification
createChangeSpecificationHasChange() - Method in class org.purl.wf4ever.roevo.jaxb.ObjectFactory
Create an instance of ChangeSpecification.HasChange
createCipherData(CipherDataType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<CipherDataType>}
createCipherDataType() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of CipherDataType
createCipherReference(CipherReferenceType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<CipherReferenceType>}
createCipherReferenceType() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of CipherReferenceType
createClass(ClassType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ClassType>}
createClassType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ClassType
createComplextype(ComplextypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ComplextypeType>}
createComplextypeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ComplextypeType
createCondition(ConditionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ConditionType>}
createCondition() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Condition
createConditions() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Conditions
createConditionStateType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ConditionStateType
createConditionType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ConditionType
createConfigBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ConfigBean
createConfiguration() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Configuration
createConfigurationType() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of ConfigurationType
createConstant(Workflow, Profile, String) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
createContainer() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of Container
createContainer(Container) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of JAXBElement<Container>}
createContainerEncryption() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of Container.Encryption
createContainerRelationships() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of Container.Relationships
createContainerRelationshipsRelationship(Relationship) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of JAXBElement<Relationship>}
createContainerRootFiles() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of Container.RootFiles
createContainerRootFiles(Container.RootFiles) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of JAXBElement<Container.RootFiles>}
createContainerRootFilesRootFile(RootFile) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of JAXBElement<RootFile>}
createContainerSignatures() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of Container.Signatures
createControl() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Control
createCoordination(CoordinationType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<CoordinationType>}
createCoordinationType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of CoordinationType
createCross(CrossType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<CrossType>}
createCrossProduct() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of CrossProduct
createCrossProduct() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of CrossProduct
createCrossType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of CrossType
createDataflow() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Dataflow
createDataflowConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of DataflowConfig
createDataLink() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of DataLink
createDataLink() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of DataLink
createDataLinkEntry() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of DataLinkEntry
createDataLinkMergePosition() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of DataLink.MergePosition
createDatalinks() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Datalinks
createDatatype(DatatypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<DatatypeType>}
createDatatypeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of DatatypeType
createDefault(DefaultType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<DefaultType>}
createDefaults(DefaultsType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<DefaultsType>}
createDefaultsType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of DefaultsType
createDefaultType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of DefaultType
createDependencies(DependenciesType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<DependenciesType>}
createDependencies() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Dependencies
createDependenciesType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of DependenciesType
createDependencyElement() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of DependencyElement
createDepthPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of DepthPort
createDepthPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of DepthPorts
createDescription() - Method in class org.w3._1999._02._22_rdf_syntax_ns.ObjectFactory
Create an instance of Description
createDescription(DescriptionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<DescriptionType>}
createDescriptionType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of DescriptionType
createDescriptiveTitle() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of DescriptiveTitle
createDigestMethod(DigestMethodType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<DigestMethodType>}
createDigestMethodType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of DigestMethodType
createDigestValue(byte[]) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<byte[]>}
createDispatchLayer() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of DispatchLayer
createDispatchStack() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of DispatchStack
createDispatchStack() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of DispatchStack
createDispatchStackDispatchStackLayers() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of DispatchStack.DispatchStackLayers
createDispatchStackLayer() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of DispatchStackLayer
createDomain() - Method in class org.w3._2000._01.rdf_schema.ObjectFactory
Create an instance of Domain
createDot(DotType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<DotType>}
createDotProduct() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of DotProduct
createDotProduct() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of DotProduct
createDotType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of DotType
createDSAKeyValue(DSAKeyValueType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<DSAKeyValueType>}
createDSAKeyValueType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of DSAKeyValueType
createElements(ElementsType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ElementsType>}
createElementsType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ElementsType
createElementtype(ElementtypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ElementtypeType>}
createElementtypeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ElementtypeType
createEncryptedData(EncryptedDataType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<EncryptedDataType>}
createEncryptedDataType() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of EncryptedDataType
createEncryptedKey(EncryptedKeyType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<EncryptedKeyType>}
createEncryptedKeyType() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of EncryptedKeyType
createEncryptionMethodType() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of EncryptionMethodType
createEncryptionMethodTypeKeySize(BigInteger) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<BigInteger>}
createEncryptionMethodTypeOAEPparams(byte[]) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<byte[]>}
createEncryptionProperties(EncryptionPropertiesType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<EncryptionPropertiesType>}
createEncryptionPropertiesType() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of EncryptionPropertiesType
createEncryptionProperty(EncryptionPropertyType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<EncryptionPropertyType>}
createEncryptionPropertyType() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of EncryptionPropertyType
createEndpoint(EndpointType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<EndpointType>}
createEndpointType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of EndpointType
createEntry() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Entry
createEntryMap() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of EntryMap
createExampleValue() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ExampleValue
createExtensions(ExtensionsType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ExtensionsType>}
createExtensionsType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ExtensionsType
createExternalToolConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ExternalToolConfig
createFlattenlist(FlattenlistType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<FlattenlistType>}
createFlattenlistType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of FlattenlistType
createFreeTextDescription() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of FreeTextDescription
createFrom(StatusCodeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<StatusCodeType>}
createGeneratedAtTime() - Method in class org.w3.prov.jaxb.ObjectFactory
Create an instance of GeneratedAtTime
createGranularDepthPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of GranularDepthPort
createGranularDepthPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of GranularDepthPorts
createGranularPortDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of GranularPortDepth
createGroup() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Group
createHadOriginalSource(Resource) - Method in class org.w3.prov.jaxb.ObjectFactory
Create an instance of JAXBElement<Resource>}
createHost(HostType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<HostType>}
createHostInstitution() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of HostInstitution
createHostType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of HostType
createHTTPHeaders() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of HTTPHeaders
createHTTPHeadersList() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of HTTPHeaders.List
createHTTPHeadersListString(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<String>}
createIdentificationAssertion() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of IdentificationAssertion
createInferno(InfernoType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<InfernoType>}
createInfernoType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of InfernoType
createInput(NodeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<NodeType>}
createInputActivityPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of InputActivityPort
createInputmap(MapType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<MapType>}
createInputPort(InputPortType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<InputPortType>}
createInputPortBinding() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of InputPortBinding
createInputPortList(InputPortListType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<InputPortListType>}
createInputPortListType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of InputPortListType
createInputPortType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of InputPortType
createInputProcessorPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of InputProcessorPort
createInputWorkflowPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of InputWorkflowPort
createIteration() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Iteration
createIterationNode() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of IterationNode
createIterationNodeParent() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of IterationNodeParent
createIterationstrategy(IterationstrategyType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<IterationstrategyType>}
createIterationStrategyStack() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of IterationStrategyStack
createIterationStrategyStack() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of IterationStrategyStack
createIterationStrategyStackIterationStrategies() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
createIterationstrategyType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of IterationstrategyType
createIterator(IteratorType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<IteratorType>}
createIteratorType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of IteratorType
createJarfile(JarfileType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<JarfileType>}
createJarfileType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JarfileType
createKeyInfo(KeyInfoType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<KeyInfoType>}
createKeyInfoType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of KeyInfoType
createKeyName(String) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<String>}
createKeyValue(KeyValueType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<KeyValueType>}
createKeyValueType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of KeyValueType
createLabel(String) - Method in class org.w3._2000._01.rdf_schema.ObjectFactory
Create an instance of JAXBElement<String>}
createLink(LinkType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<LinkType>}
createLink() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Link
createLinkType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of LinkType
createLocal(LocalType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<LocalType>}
createLocalDependencies() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of LocalDependencies
createLocalType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of LocalType
createLoopConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of LoopConfig
createManifest(ManifestType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<ManifestType>}
createManifestType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of ManifestType
createMap() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Map
createMapping() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Mapping
createMapType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of MapType
createMarshaller() - Static method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
createMergemode(MergemodeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<MergemodeType>}
createMergemodeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of MergemodeType
createMetadata(MetadataType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<MetadataType>}
createMetadataType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of MetadataType
createMethod(MethodType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<MethodType>}
createMethodType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of MethodType
createMgmtData(String) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<String>}
createMimeType(MimeTypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<MimeTypeType>}
createMimeType() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of MimeType
createMimeTypes() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of MimeTypes
createMimeTypeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of MimeTypeType
createMobyEndpoint(MobyEndpointType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<MobyEndpointType>}
createMobyEndpointType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of MobyEndpointType
createName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of JAXBElement<String>}
createNetSfTavernaT2ActivitiesExternaltoolExternalToolActivityConfigurationBean(ExternalToolConfig) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<ExternalToolConfig>}
createNetSfTavernaT2ActivitiesRestRESTActivityConfigurationBean(RESTConfig) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<RESTConfig>}
createNetSfTavernaT2ActivitiesUsecaseUseCaseActivityConfigurationBean(UsecaseConfig) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<UsecaseConfig>}
createNetSfTavernaT2ActivitiesXpathXPathActivityConfigurationBean(XPathConfig) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<XPathConfig>}
createNodeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of NodeType
createNotification(NotificationType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<NotificationType>}
createNotificationType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of NotificationType
createObject(ObjectType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<ObjectType>}
createObjectType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of ObjectType
createOperation(OperationType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<OperationType>}
createOperationType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of OperationType
createOptional() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Optional
createOriginalConfigBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of OriginalConfigBean
createOutput(NodeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<NodeType>}
createOutputActivityPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of OutputActivityPort
createOutputmap(MapType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<MapType>}
createOutputPort(OutputPortType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<OutputPortType>}
createOutputPortBinding() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of OutputPortBinding
createOutputPortList(OutputPortListType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<OutputPortListType>}
createOutputPortListType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of OutputPortListType
createOutputPortType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of OutputPortType
createOutputProcessorPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of OutputProcessorPort
createOutputWorkflowPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of OutputWorkflowPort
createParallelizeConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ParallelizeConfig
createPGPData(PGPDataType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<PGPDataType>}
createPGPDataType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of PGPDataType
createPGPDataTypePGPKeyID(byte[]) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<byte[]>}
createPGPDataTypePGPKeyPacket(byte[]) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<byte[]>}
createPort(PortType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<PortType>}
createPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Port
createPortDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of PortDepth
createPortNode() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of PortNode
createPortNodeDesiredDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of PortNode.DesiredDepth
createPortProduct() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of PortProduct
createPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Ports
createPortType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of PortType
createProcessor() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Processor
createProcessor(ProcessorType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ProcessorType>}
createProcessor() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Processor
createProcessorAndBindingFromActivity(Activity) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
createProcessorBinding() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of ProcessorBinding
createProcessorBindingActivityPosition() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of ProcessorBinding.ActivityPosition
createProcessorBindingInputPortBinding() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of ProcessorBinding.InputPortBinding
createProcessorBindingOutputPortBinding() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
createProcessorDispatchStack() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Processor.DispatchStack
createProcessorElement(Object) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<Object>}
createProcessorInputProcessorPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Processor.InputProcessorPort
createProcessorIterationStrategyStack() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Processor.IterationStrategyStack
createProcessorOutputProcessorPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Processor.OutputProcessorPort
createProcessorPortsFromActivity(Processor, Activity) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
createProcessors() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Processors
createProcessorType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ProcessorType
createProductOf() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of ProductOf
createProfile() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Profile
createProfileDocument() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of ProfileDocument
createProperties() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Properties
createProperty() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Property
createRange() - Method in class org.w3._2000._01.rdf_schema.ObjectFactory
Create an instance of Range
createRaven() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Raven
createRDF() - Method in class org.w3._1999._02._22_rdf_syntax_ns.ObjectFactory
Create an instance of RDF
createRDF(RDF) - Method in class org.w3._1999._02._22_rdf_syntax_ns.ObjectFactory
Create an instance of JAXBElement<RDF>}
createReference(ReferenceType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<ReferenceType>}
createReferenceList() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of ReferenceList
createReferenceListDataReference(ReferenceType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<ReferenceType>}
createReferenceListKeyReference(ReferenceType) - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of JAXBElement<ReferenceType>}
createReferenceType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of ReferenceType
createReferenceType() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of ReferenceType
createRelationship() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of Relationship
createRepositories(RepositoriesType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<RepositoriesType>}
createRepositoriesType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of RepositoriesType
createRepository(RepositoryType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<RepositoryType>}
createRepositoryType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of RepositoryType
createRequired() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Required
createResource() - Method in class org.w3._1999._02._22_rdf_syntax_ns.ObjectFactory
Create an instance of Resource
createRESTConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of RESTConfig
createRetrievalMethod(RetrievalMethodType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<RetrievalMethodType>}
createRetrievalMethodType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of RetrievalMethodType
createRetryConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of RetryConfig
createReturnCodes() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ReturnCodes
createRoEvoDocument() - Method in class org.purl.wf4ever.roevo.jaxb.ObjectFactory
Create an instance of RoEvoDocument
createRootFile() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create an instance of RootFile
createRSAKeyValue(RSAKeyValueType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<RSAKeyValueType>}
createRSAKeyValueType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of RSAKeyValueType
createRshell(RshellType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<RshellType>}
createRShellConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of RShellConfig
createRShellConnection() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of RShellConnection
createRshellInputPort(RshellInputPortType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<RshellInputPortType>}
createRshellInputPortList(RshellInputPortListType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<RshellInputPortListType>}
createRshellInputPortListType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of RshellInputPortListType
createRshellInputPortType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of RshellInputPortType
createRshellOutputPort(RshellOutputPortType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<RshellOutputPortType>}
createRshellOutputPortList(RshellOutputPortListType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<RshellOutputPortListType>}
createRshellOutputPortListType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of RshellOutputPortListType
createRshellOutputPortType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of RshellOutputPortType
createRShellSymanticType() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of RShellSymanticType
createRShellSymanticTypeRShellPortSymanticTypeBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
createRShellSymanticTypeRShellPortSymanticTypeBeanSymanticType() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
createRshellType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of RshellType
createScriptInputStatic() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ScriptInputStatic
createScriptInputStaticContent() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ScriptInputStatic.Content
createScriptInputUser() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ScriptInputUser
createScriptOutput() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of ScriptOutput
createScriptvalue(ScriptvalueType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ScriptvalueType>}
createScriptvalueType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ScriptvalueType
createScufl(ScuflType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ScuflType>}
createScuflType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ScuflType
createSeeAlso() - Method in class org.w3._2000._01.rdf_schema.ObjectFactory
Create an instance of SeeAlso
createSeeAlsoType() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of SeeAlsoType
createSemanticAnnotation() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of SemanticAnnotation
createSemanticType(SemanticTypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<SemanticTypeType>}
createSemanticTypeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of SemanticTypeType
createService(ServiceType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ServiceType>}
createServiceName(ServiceNameType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ServiceNameType>}
createServiceNameType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ServiceNameType
createServiceType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of ServiceType
createSignature(SignatureType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<SignatureType>}
createSignatureMethod(SignatureMethodType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<SignatureMethodType>}
createSignatureMethodType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of SignatureMethodType
createSignatureMethodTypeHMACOutputLength(BigInteger) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<BigInteger>}
createSignatureProperties(SignaturePropertiesType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<SignaturePropertiesType>}
createSignaturePropertiesType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of SignaturePropertiesType
createSignatureProperty(SignaturePropertyType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<SignaturePropertyType>}
createSignaturePropertyType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of SignaturePropertyType
createSignatureType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of SignatureType
createSignatureValue(SignatureValueType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<SignatureValueType>}
createSignatureValueType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of SignatureValueType
createSignedInfo(SignedInfoType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<SignedInfoType>}
createSignedInfoType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of SignedInfoType
createSink(SinkType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<SinkType>}
createSinkType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of SinkType
createSlicelist(SlicelistType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<SlicelistType>}
createSlicelistType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of SlicelistType
createSoaplabConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of SoaplabConfig
createSoaplabwsdl(SoaplabwsdlType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<SoaplabwsdlType>}
createSoaplabwsdlType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of SoaplabwsdlType
createSource(SourceType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<SourceType>}
createSourceType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of SourceType
createSPKIData(SPKIDataType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<SPKIDataType>}
createSPKIDataType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of SPKIDataType
createSPKIDataTypeSPKISexp(byte[]) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<byte[]>}
createSpreadsheetColumnNameEntry() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of SpreadsheetColumnNameEntry
createSpreadsheetColumnNames() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of SpreadsheetColumnNames
createSpreadsheetExcludes() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of SpreadsheetExcludes
createSpreadsheetImportConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of SpreadsheetImportConfig
createSpreadsheetRange() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of SpreadsheetRange
createState(ConditionStateType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<ConditionStateType>}
createStatechange(StatechangeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<StatechangeType>}
createStatechangeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of StatechangeType
createStaticInputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of StaticInputs
createStatusCodeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of StatusCodeType
createStringconstant(StringconstantType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<StringconstantType>}
createStringConstantConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of StringConstantConfig
createStringconstantType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of StringconstantType
createSubClassOf() - Method in class org.w3._2000._01.rdf_schema.ObjectFactory
Create an instance of SubClassOf
createSubPropertyOf() - Method in class org.w3._2000._01.rdf_schema.ObjectFactory
Create an instance of SubPropertyOf
createTarget(TargetType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<TargetType>}
createTargetType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of TargetType
createTemplate(TemplateType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<TemplateType>}
createTemplateLiteral(TemplateLiteralType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<TemplateLiteralType>}
createTemplateLiteralType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of TemplateLiteralType
createTemplatePortReference(TemplatePortReferenceType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<TemplatePortReferenceType>}
createTemplatePortReferenceType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of TemplatePortReferenceType
createTemplateType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of TemplateType
createTo(StatusCodeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<StatusCodeType>}
createTopIterationNode() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of TopIterationNode
createTransform(TransformType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<TransformType>}
createTransforms(TransformsType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<TransformsType>}
createTransformsType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of TransformsType
createTransformsType() - Method in class org.w3._2001._04.xmlenc.ObjectFactory
Create an instance of TransformsType
createTransformType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of TransformType
createTransformTypeXPath(String) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<String>}
createType() - Method in class org.w3._1999._02._22_rdf_syntax_ns.ObjectFactory
Create an instance of Type
createUnMarshaller() - Static method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
createUsecaseConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of UsecaseConfig
createUsecaseDescription() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of UsecaseDescription
createVersionableResource() - Method in class org.purl.wf4ever.roevo.jaxb.ObjectFactory
Create an instance of VersionableResource
createVersionableResourceWasChangedBy() - Method in class org.purl.wf4ever.roevo.jaxb.ObjectFactory
Create an instance of VersionableResource.WasChangedBy
createWasAssociatedWith(Resource) - Method in class org.w3.prov.jaxb.ObjectFactory
Create an instance of JAXBElement<Resource>}
createWasAttributedTo(Resource) - Method in class org.w3.prov.jaxb.ObjectFactory
Create an instance of JAXBElement<Resource>}
createWasRevisionOf(Resource) - Method in class org.w3.prov.jaxb.ObjectFactory
Create an instance of JAXBElement<Resource>}
createWorkflow() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Workflow
createWorkflow() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of Workflow
createWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<Workflow>}
createWorkflowBundle() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of WorkflowBundle
createWorkflowBundleDocument() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of WorkflowBundleDocument
createWorkflowBundleProfile() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of WorkflowBundle.Profile
createWorkflowBundleWorkflow() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of WorkflowBundle.Workflow
createWorkflowdescription(WorkflowDescriptionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<WorkflowDescriptionType>}
createWorkflowDescriptionType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of WorkflowDescriptionType
createWorkflowDocument() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of WorkflowDocument
createWorkflowInputWorkflowPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Workflow.InputWorkflowPort
createWorkflowOutputWorkflowPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Workflow.OutputWorkflowPort
createWorkflowProcessor() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create an instance of Workflow.Processor
createWsdl(WsdlType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of JAXBElement<WsdlType>}
createWSDLConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of WSDLConfig
createWsdlType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create an instance of WsdlType
createX509Data(X509DataType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<X509DataType>}
createX509DataType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of X509DataType
createX509DataTypeX509Certificate(byte[]) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<byte[]>}
createX509DataTypeX509CRL(byte[]) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<byte[]>}
createX509DataTypeX509IssuerSerial(X509IssuerSerialType) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<X509IssuerSerialType>}
createX509DataTypeX509SKI(byte[]) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<byte[]>}
createX509DataTypeX509SubjectName(String) - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of JAXBElement<String>}
createX509IssuerSerialType() - Method in class org.w3._2000._09.xmldsig.ObjectFactory
Create an instance of X509IssuerSerialType
createXMLSplitterConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of XMLSplitterConfig
createXPathConfig() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of XPathConfig
createXPathNamespaceMap() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of XPathNamespaceMap
createXPathNamespaceMapList() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of XPathNamespaceMap.List
createXPathNamespaceMapListString(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create an instance of JAXBElement<String>}
creators - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
 
critical - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
 
critical - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
 
cross - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.CrossType
 
cross - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DotType
 
cross - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
 
cross - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
 
crossOrDotOrPort - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.IterationNodeParent
 
CrossProduct - Class in uk.org.taverna.scufl2.api.iterationstrategy
 
CrossProduct() - Constructor for class uk.org.taverna.scufl2.api.iterationstrategy.CrossProduct
 
CrossProduct - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
CrossProduct() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.CrossProduct
 
CrossProduct - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for CrossProduct complex type.
CrossProduct() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.CrossProduct
 
crossProductOrDotProductOrPortNode - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProductOf
 
CrossType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for crossType complex type.
CrossType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.CrossType
 
csvDelimiter - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
curationEventList - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
 

D

Dataflow - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
A dataflow, that is a workflow that is data-driven.
Dataflow() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
 
dataflow - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Workflow
 
DataflowActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
DataflowActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.DataflowActivityParser
 
DataflowConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Configuration for the nested dataflow activity.
DataflowConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataflowConfig
 
DataLink - Class in uk.org.taverna.scufl2.api.core
A DataLink controls the flow of data in a Workflow.
DataLink() - Constructor for class uk.org.taverna.scufl2.api.core.DataLink
Constructs an unconnected DataLink.
DataLink(Workflow, SenderPort, ReceiverPort) - Constructor for class uk.org.taverna.scufl2.api.core.DataLink
Constructs a DataLink with the specified parent Workflow that connects the specified SenderPort and ReceiverPort.
DataLink - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for DataLink complex type.
DataLink() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
 
dataLink - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLinkEntry
 
datalink - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
 
DataLink - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
A link between two dataflow units, from source to link.
DataLink() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataLink
 
datalink - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Datalinks
 
DataLink.MergePosition - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
DataLink.MergePosition() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink.MergePosition
 
DataLinkEntry - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
DataLinkEntry() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.DataLinkEntry
 
dataLinkReceiver(DataLink) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
dataLinkReceiver(DataLink) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
dataLinkReceiver(DataLink) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
dataLinkReceiver(DataLink) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
datalinks - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
 
Datalinks - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of datalinks between dataflow ports and processors in a workflow.
Datalinks() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Datalinks
 
dataLinkSender(DataLink) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
dataLinkSender(DataLink) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
dataLinkSender(DataLink) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
dataLinkSender(DataLink) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
datalinksFrom(SenderPort) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
datalinksTo(ReceiverPort) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
dataReferenceOrKeyReference - Variable in class org.w3._2001._04.xmlenc.ReferenceList
 
datatype - Variable in class org.w3.prov.jaxb.GeneratedAtTime
 
datatype - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink.MergePosition
 
datatype - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.GranularPortDepth
 
datatype - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.PortDepth
 
datatype - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode.DesiredDepth
 
datatype - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.ActivityPosition
 
datatype - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Required
 
datatype - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
 
datatypeName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
 
DatatypeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for datatypeType complex type.
DatatypeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.DatatypeType
 
date - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
 
DC - Static variable in class uk.org.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
 
DEFAULT_PRODUCED_BY - Static variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
DefaultCorrectnessValidationListener - Class in uk.org.taverna.scufl2.validation.correctness
 
DefaultCorrectnessValidationListener() - Constructor for class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
DefaultDispatchingVisitor - Class in uk.org.taverna.scufl2.validation.correctness
 
DefaultDispatchingVisitor() - Constructor for class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
defaults - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
DefaultStructuralValidationListener - Class in uk.org.taverna.scufl2.validation.structural
 
DefaultStructuralValidationListener() - Constructor for class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
DefaultsType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for defaultsType complex type.
DefaultsType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.DefaultsType
 
DefaultType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for defaultType complex type.
DefaultType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.DefaultType
 
dependencies - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
 
dependencies - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
 
dependencies - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
 
Dependencies - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for Dependencies complex type.
Dependencies() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dependencies
 
DependenciesType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for dependenciesType complex type.
DependenciesType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.DependenciesType
 
DEPENDENCY_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BeanshellActivityParser
 
DependencyElement - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for DependencyElement complex type.
DependencyElement() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
 
depth - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.FlattenlistType
 
depth - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SlicelistType
 
depth - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DepthPort
 
depth - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.PortProduct
 
DepthPort - Interface in uk.org.taverna.scufl2.api.port
 
DepthPort - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for DepthPort complex type.
DepthPort() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.DepthPort
 
DepthPorts - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of ports that have depths.
DepthPorts() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.DepthPorts
 
depthResolution(WorkflowBean, Integer) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
depthResolution(WorkflowBean, Integer) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
depthResolution(WorkflowBean, Integer) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
depthResolution(WorkflowBean, Integer) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
Description - Class in org.w3._1999._02._22_rdf_syntax_ns
Java class for anonymous complex type.
Description() - Constructor for class org.w3._1999._02._22_rdf_syntax_ns.Description
 
description - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
 
description - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
 
description - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MetadataType
 
description - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
description - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
description - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
DescriptionType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for descriptionType complex type.
DescriptionType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.DescriptionType
 
DescriptiveTitle - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for DescriptiveTitle complex type.
DescriptiveTitle() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.DescriptiveTitle
 
desiredDepth - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode
 
detectedProblems() - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
detectedProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
detectedProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
detectedProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
detectedProblems() - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
detectedProblems() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
detectedProblems() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
detectedProblems() - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
deUniLuebeckInbKnowarcUsecasesScriptInputStatic - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.StaticInputs
 
deUniLuebeckInbKnowarcUsecasesScriptInputUser - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Entry
 
deUniLuebeckInbKnowarcUsecasesScriptOutput - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Entry
 
digestMethod - Variable in class org.w3._2000._09.xmldsig.ReferenceType
 
DigestMethodType - Class in org.w3._2000._09.xmldsig
Java class for DigestMethodType complex type.
DigestMethodType() - Constructor for class org.w3._2000._09.xmldsig.DigestMethodType
 
digestValue - Variable in class org.w3._2000._09.xmldsig.ReferenceType
 
dimension - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
 
dimension - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
 
discoveredScuflExtensionParsers - Variable in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
discoveredT2Parsers - Variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
discoverReaders() - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
 
discoverWriters() - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
 
DispatchingVisitor - Class in uk.org.taverna.scufl2.validation.correctness
 
DispatchingVisitor() - Constructor for class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
DispatchLayer - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
A dispatch layer, identified by Java class name.
DispatchLayer() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
 
dispatchLayer - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchStack
 
DispatchStack - Class in uk.org.taverna.scufl2.api.dispatchstack
A DispatchStack controls how a Processor invokes an Activity.
DispatchStack() - Constructor for class uk.org.taverna.scufl2.api.dispatchstack.DispatchStack
Constructs a DispatchStack.
DispatchStack(Processor) - Constructor for class uk.org.taverna.scufl2.api.dispatchstack.DispatchStack
Constructs a DispatchStack for the specified Processor.
DispatchStack - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
DispatchStack() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack
 
dispatchStack - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
 
dispatchStack - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.DispatchStack
 
DispatchStack - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of dispatch layers.
DispatchStack() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchStack
 
dispatchStack - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
 
DispatchStack.DispatchStackLayers - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
DispatchStack.DispatchStackLayers() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack.DispatchStackLayers
 
dispatchStackByType(Processor, URI) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
DispatchStackLayer - Class in uk.org.taverna.scufl2.api.dispatchstack
A DispatchStackLayer adds functionality to a DispatchStack.
DispatchStackLayer() - Constructor for class uk.org.taverna.scufl2.api.dispatchstack.DispatchStackLayer
Constructs a DispatchStackLayer.
DispatchStackLayer(DispatchStack, URI) - Constructor for class uk.org.taverna.scufl2.api.dispatchstack.DispatchStackLayer
Constructs a DispatchStackLayer for the specified DispatchStack with the specified type.
dispatchStackLayer - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack.DispatchStackLayers
 
DispatchStackLayer - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
DispatchStackLayer() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStackLayer
 
dispatchStackLayers - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack
 
Domain - Class in org.w3._2000._01.rdf_schema
Java class for anonymous complex type.
Domain() - Constructor for class org.w3._2000._01.rdf_schema.Domain
 
dot - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.CrossType
 
dot - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DotType
 
dot - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
 
dot - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
 
DotProduct - Class in uk.org.taverna.scufl2.api.iterationstrategy
 
DotProduct() - Constructor for class uk.org.taverna.scufl2.api.iterationstrategy.DotProduct
 
DotProduct - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
DotProduct() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.DotProduct
 
DotProduct - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for DotProduct complex type.
DotProduct() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.DotProduct
 
dotProductIterationMismatch(DotProduct) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
dotProductIterationMismatch(DotProduct) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
dotProductIterationMismatch(DotProduct) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
dotProductIterationMismatch(DotProduct) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
DotProductIterationMismatchProblem - Class in uk.org.taverna.scufl2.validation.structural.report
 
DotProductIterationMismatchProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.structural.report.DotProductIterationMismatchProblem
 
dotProductOrCrossProduct - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack.IterationStrategies
 
DotType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for dotType complex type.
DotType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.DotType
 
DSAKeyValueType - Class in org.w3._2000._09.xmldsig
Java class for DSAKeyValueType complex type.
DSAKeyValueType() - Constructor for class org.w3._2000._09.xmldsig.DSAKeyValueType
 

E

edited - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
 
element - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
 
element - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dependencies
 
elements - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
 
ElementsType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for elementsType complex type.
ElementsType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementsType
 
elementToXML(Element) - Static method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
elementtype - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
 
ElementtypeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for elementtypeType complex type.
ElementtypeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
 
emptyCellPolicy - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
emptyCellValue - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
emptyCrossProduct(CrossProduct) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
emptyCrossProduct(CrossProduct) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
emptyCrossProduct(CrossProduct) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
emptyCrossProduct(CrossProduct) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
EmptyCrossProductProblem - Class in uk.org.taverna.scufl2.validation.structural.report
 
EmptyCrossProductProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.structural.report.EmptyCrossProductProblem
 
emptyDotProduct(DotProduct) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
emptyDotProduct(DotProduct) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
emptyDotProduct(DotProduct) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
emptyDotProduct(DotProduct) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
EmptyDotProductProblem - Class in uk.org.taverna.scufl2.validation.structural.report
 
EmptyDotProductProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.structural.report.EmptyDotProductProblem
 
emptyIterationStrategyTopNode(IterationStrategyTopNode) - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
emptyIterationStrategyTopNode(IterationStrategyTopNode) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
emptyIterationStrategyTopNode(IterationStrategyTopNode) - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
emptyIterationStrategyTopNode(IterationStrategyTopNode) - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
EmptyIterationStrategyTopNodeProblem - Class in uk.org.taverna.scufl2.validation.correctness.report
 
EmptyIterationStrategyTopNodeProblem(IterationStrategyTopNode) - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.EmptyIterationStrategyTopNodeProblem
 
encoding - Variable in class org.w3._2000._09.xmldsig.ObjectType
 
encoding - Variable in class org.w3._2001._04.xmlenc.EncryptedType
 
encoding - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
 
Encoding - Enum in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for Encoding.
encoding - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
 
encryptedDataOrEncryptedKey - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Encryption
 
EncryptedDataType - Class in org.w3._2001._04.xmlenc
Java class for EncryptedDataType complex type.
EncryptedDataType() - Constructor for class org.w3._2001._04.xmlenc.EncryptedDataType
 
EncryptedKeyType - Class in org.w3._2001._04.xmlenc
Java class for EncryptedKeyType complex type.
EncryptedKeyType() - Constructor for class org.w3._2001._04.xmlenc.EncryptedKeyType
 
EncryptedType - Class in org.w3._2001._04.xmlenc
Java class for EncryptedType complex type.
EncryptedType() - Constructor for class org.w3._2001._04.xmlenc.EncryptedType
 
encryption - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
 
EncryptionData - Class in uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest
 
EncryptionData() - Constructor for class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
 
EncryptionData(String, String, Algorithm, KeyDerivation) - Constructor for class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
 
encryptionMethod - Variable in class org.w3._2001._04.xmlenc.EncryptedType
 
EncryptionMethodType - Class in org.w3._2001._04.xmlenc
Java class for EncryptionMethodType complex type.
EncryptionMethodType() - Constructor for class org.w3._2001._04.xmlenc.EncryptionMethodType
 
encryptionProperties - Variable in class org.w3._2001._04.xmlenc.EncryptedType
 
EncryptionPropertiesType - Class in org.w3._2001._04.xmlenc
Java class for EncryptionPropertiesType complex type.
EncryptionPropertiesType() - Constructor for class org.w3._2001._04.xmlenc.EncryptionPropertiesType
 
encryptionProperty - Variable in class org.w3._2001._04.xmlenc.EncryptionPropertiesType
 
EncryptionPropertyType - Class in org.w3._2001._04.xmlenc
Java class for EncryptionPropertyType complex type.
EncryptionPropertyType() - Constructor for class org.w3._2001._04.xmlenc.EncryptionPropertyType
 
end - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
 
endpoint - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
 
endpoint - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
 
EndpointType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for endpointType complex type.
EndpointType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.EndpointType
 
ENTITY - Static variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
entry - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs
 
entry - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobySecondaries
 
Entry - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for Entry complex type.
Entry() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Entry
 
entry - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.EntryMap
 
entry - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNames
 
EntryMap - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for EntryMap complex type.
EntryMap() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.EntryMap
 
equals(Object) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
equals(Object) - Method in class uk.org.taverna.scufl2.api.common.AbstractNamed
 
equals(Object) - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
WorkflowBundles are only equal by instance identity.
equals(Object) - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
 
equals(Object) - Method in class uk.org.taverna.scufl2.api.core.DataLink
 
equals(Object) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.CrossProduct
 
equals(Object) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.DotProduct
 
equals(Object) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.IterationStrategyStack
 
equals(Object) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
equals(Object) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
 
ErrorBounceParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
 
ErrorBounceParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ErrorBounceParser
 
escapeParameters - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
exampleDataURI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
ExampleValue - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ExampleValue complex type.
ExampleValue() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExampleValue
 
exclude - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetExcludes
 
excludeFirstRow - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
excludes - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
 
executionTimeoutInSeconds - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
exponent - Variable in class org.w3._2000._09.xmldsig.RSAKeyValueType
 
ExtensionsType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for extensionsType complex type.
ExtensionsType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
 
ExternalToolActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.t23activities
 
ExternalToolActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
 
ExternalToolConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ExternalToolConfig complex type.
ExternalToolConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
 
externaltoolid - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
 

F

failedProcessorAdded(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
failedProcessorAdded(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
failedProcessorAdded(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
failedProcessorAdded(Processor) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
FailedProcessorProblem - Class in uk.org.taverna.scufl2.validation.structural.report
 
FailedProcessorProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.structural.report.FailedProcessorProblem
 
FailoverParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
 
FailoverParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.FailoverParser
 
file - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
 
file - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
 
findAncestral(Child, Class<T>) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
findNamed(Collection<T>, String) - Static method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
findParent(Class<T>, Child<?>) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
findReceiverPort(Workflow, Link) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
findSenderPort(Workflow, Link) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
findWorkflowBundlePath() - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowBundleParser
 
first() - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
flattenlist - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
 
FlattenlistType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for flattenlistType complex type.
FlattenlistType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.FlattenlistType
 
forceCopy - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
 
forceCopy - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
 
FreeTextDescription - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for FreeTextDescription complex type.
FreeTextDescription() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.FreeTextDescription
 
from - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.StatechangeType
 
from - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Mapping
 
fromValue(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.ClassLoaderSharing
 
fromValue(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.Encoding
 
fromValue(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.LinkType
 
fromValue(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.OutputFormat
 
fromValue(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.Role
 
fromValue(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetEmptyCellPolicy
 
fromValue(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.StandardWSDLSecurityProfile
 
fromVersion - Variable in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification
 
fullPath - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.RootFile
 

G

g - Variable in class org.w3._2000._09.xmldsig.DSAKeyValueType
 
generatedAtTime - Variable in class org.purl.wf4ever.roevo.jaxb.VersionableResource
 
GeneratedAtTime - Class in org.w3.prov.jaxb
Java class for anonymous complex type.
GeneratedAtTime() - Constructor for class org.w3.prov.jaxb.GeneratedAtTime
 
generateIdentifier() - Static method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
generateNewIdentifier() - Method in class uk.org.taverna.scufl2.api.common.AbstractRevisioned
 
get(Object) - Method in class uk.org.taverna.scufl2.api.impl.LazyMap
 
getAbout() - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource
Gets the value of the about property.
getAbout() - Method in class org.w3._1999._02._22_rdf_syntax_ns.Description
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Blocking
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.CrossProduct
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStackLayer
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DotProduct
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputActivityPort
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputPortBinding
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputProcessorPort
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputWorkflowPort
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputPortBinding
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputWorkflowPort
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.SeeAlsoType
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Gets the value of the about property.
getAbout() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Gets the value of the about property.
getAcceptsHeaderValue() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the acceptsHeaderValue property.
getAction() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CoordinationType
Gets the value of the action property.
getActivateConfiguration() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
Gets the value of the activateConfiguration property.
getActivities() - Method in class uk.org.taverna.scufl2.api.profiles.Profile
Returns the Activitys that this Profile contains.
getActivities() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Gets the value of the activities property.
getActivity() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activities
Gets the value of the activity property.
getActivityInputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the activityInputs property.
getActivityPosition() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
Returns the relative position of the bound Activity within the Processor (for the purpose of Failover).
getActivityPosition() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Gets the value of the activityPosition property.
getAddition() - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification.HasChange
Gets the value of the addition property.
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.AbstractProcessorExtensionParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.ApiConsumerExtensionParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.BeanshellExtensionParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.BiomartExtensionParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.BiomobyExtensionParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.LocalExtensionParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.RshellExtensionParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.SoaplabExtensionParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.StringConstantExtensionParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.WsdlExtensionParser
 
getAdditionalSchemas() - Method in interface uk.org.taverna.scufl2.translator.scufl.ScuflExtensionParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.AbstractActivityParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.XPathActivityParser
 
getAdditionalSchemas() - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
getAdditionalSchemas() - Method in interface uk.org.taverna.scufl2.translator.t2flow.T2Parser
 
getAdditionOf() - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
getAlgorithm() - Method in class org.w3._2000._09.xmldsig.CanonicalizationMethodType
Gets the value of the algorithm property.
getAlgorithm() - Method in class org.w3._2000._09.xmldsig.DigestMethodType
Gets the value of the algorithm property.
getAlgorithm() - Method in class org.w3._2000._09.xmldsig.SignatureMethodType
Gets the value of the algorithm property.
getAlgorithm() - Method in class org.w3._2000._09.xmldsig.TransformType
Gets the value of the algorithm property.
getAlgorithm() - Method in class org.w3._2001._04.xmlenc.AgreementMethodType
Gets the value of the algorithm property.
getAlgorithm() - Method in class org.w3._2001._04.xmlenc.EncryptionMethodType
Gets the value of the algorithm property.
getAlgorithm() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
 
getAlternate() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the alternate property.
getAnnotatedAt() - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
getAnnotatedBy() - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
getAnnotationAssertions() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain.NetSfTavernaT2AnnotationAnnotationChainImpl
Gets the value of the annotationAssertions property.
getAnnotationBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
Gets the value of the annotationBean property.
getAnnotationChainOrAnnotationChain22() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Annotations
Gets the value of the annotationChainOrAnnotationChain22 property.
getAnnotations() - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
getAnnotations() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Gets the value of the annotations property.
getAnnotations() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedGranularDepthPort
Gets the value of the annotations property.
getAnnotations() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedPort
Gets the value of the annotations property.
getAnnotations() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Gets the value of the annotations property.
getAnnotations() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Gets the value of the annotations property.
getAny() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Relationship
Gets the value of the any property.
getAny() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.RootFile
Gets the value of the any property.
getAny() - Method in class org.w3._1999._02._22_rdf_syntax_ns.Description
Gets the value of the any property.
getAny() - Method in class org.w3._1999._02._22_rdf_syntax_ns.RDF
Gets the value of the any property.
getAny() - Method in class org.w3._2001._04.xmlenc.ReferenceType
Gets the value of the any property.
getAny() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Gets the value of the any property.
getAny() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomartType
Gets the value of the any property.
getAny() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationBean
Gets the value of the any property.
getAny() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyCategory
Gets the value of the any property.
getAny() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyServiceType
Gets the value of the any property.
getAny() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
Gets the value of the any property.
getAny5() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Gets the value of the any5 property.
getAny7() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Gets the value of the any7 property.
getAny9() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Gets the value of the any9 property.
getAnyOrRelationship() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Relationships
Gets the value of the anyOrRelationship property.
getAnyOrRootFile() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.RootFiles
Gets the value of the anyOrRootFile property.
getApiConsumerDescription() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the apiConsumerDescription property.
getApiConsumerName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the apiConsumerName property.
getArraytype() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
Gets the value of the arraytype property.
getArraytype() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
Gets the value of the arraytype property.
getArticleName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
Gets the value of the articleName property.
getArticleNameUsedByService() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
Gets the value of the articleNameUsedByService property.
getArtifact() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArtifactType
Gets the value of the artifact property.
getArtifact() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DependenciesType
Gets the value of the artifact property.
getArtifact() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Raven
Gets the value of the artifact property.
getArtifactDependencies() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the artifactDependencies property.
getArtifactDependencies() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Gets the value of the artifactDependencies property.
getArtifactId() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
Gets the value of the artifactId property.
getAuthor() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
Gets the value of the author property.
getAuthorityName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
Gets the value of the authorityName property.
getAuthorityName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
Gets the value of the authorityName property.
getAuthorityName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
Gets the value of the authorityName property.
getBackoff() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
Gets the value of the backoff property.
getBackoffFactor() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
Gets the value of the backoffFactor property.
getBase() - Method in class org.w3._1999._02._22_rdf_syntax_ns.RDF
Gets the value of the base property.
getBasetype() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
Gets the value of the basetype property.
getBaseURI() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Get the URI, where this ODF package is stored.
getBean() - Method in class uk.org.taverna.scufl2.validation.ValidationProblem
 
getBean() - Method in interface uk.org.taverna.scufl2.validation.WorkflowBeanReport
 
getBeanshellinput() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellinputlistType
Gets the value of the beanshellinput property.
getBeanshellinputlist() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
Gets the value of the beanshellinputlist property.
getBeanshelloutput() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputlistType
Gets the value of the beanshelloutput property.
getBeanshelloutputlist() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
Gets the value of the beanshelloutputlist property.
getBeanToUri() - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
getBindActivity() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Gets the value of the bindActivity property.
getBindInputActivityPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputPortBinding
Gets the value of the bindInputActivityPort property.
getBindInputProcessorPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputPortBinding
Gets the value of the bindInputProcessorPort property.
getBindOutputActivityPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputPortBinding
Gets the value of the bindOutputActivityPort property.
getBindOutputProcessorPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputPortBinding
Gets the value of the bindOutputProcessorPort property.
getBindProcessor() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Gets the value of the bindProcessor property.
getBlock() - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
Returns the Processor that is blocked from starting.
getBlock() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Blocking
Gets the value of the block property.
getBlocking() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Control
Gets the value of the blocking property.
getBody() - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
getBoring() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the boring property.
getBoundActivity() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
Returns the Activity that will be used to enact the Processor if this ProcessorBinding is used.
getBoundActivityPort() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorInputPortBinding
Returns the InputActivityPort to which data is actually sent when passed to the bound InputProcessorPort.
getBoundActivityPort() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
Returns the OutputActivityPort from which data is received for the bound OutputProcessorPort.
getBoundActivityPort() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorPortBinding
Return the ActivityPort which is passing data from/to the ProcessorPortBinding.getBoundProcessorPort().
getBoundProcessor() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
Returns the Processor for which a possible means of enactment is specified.
getBoundProcessorPort() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorInputPortBinding
Returns the InputProcessorPort that the binding is for.
getBoundProcessorPort() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
Returns the OutputProcessorPort that the binding is for.
getBoundProcessorPort() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorPortBinding
Return the ProcessorPort which is passing data to/from the ProcessorPortBinding.getBoundActivityPort().
getBreakpoint() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Gets the value of the breakpoint property.
getBreakpoint() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Gets the value of the breakpoint property.
getByName(String) - Method in class uk.org.taverna.scufl2.api.common.NamedSet
Return the element with the given name from the set.
getBytes(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Get package (sub-) content as byte array
getCanonicalizationMethod() - Method in class org.w3._2000._09.xmldsig.SignedInfoType
Gets the value of the canonicalizationMethod property.
getCarriedKeyName() - Method in class org.w3._2001._04.xmlenc.EncryptedKeyType
Gets the value of the carriedKeyName property.
getCategory() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
Gets the value of the category property.
getChangeSpecification() - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource.WasChangedBy
Gets the value of the changeSpecification property.
getChangeSpecificationType() - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
getCharsetName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Gets the value of the charsetName property.
getCharsetName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Gets the value of the charsetName property.
getChecksum() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
 
getChecksumType() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
 
getCipherData() - Method in class org.w3._2001._04.xmlenc.EncryptedType
Gets the value of the cipherData property.
getCipherReference() - Method in class org.w3._2001._04.xmlenc.CipherDataType
Gets the value of the cipherReference property.
getCipherValue() - Method in class org.w3._2001._04.xmlenc.CipherDataType
Gets the value of the cipherValue property.
getClassloader() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DependenciesType
Gets the value of the classloader property.
getClassLoaderSharing() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the classLoaderSharing property.
getClassLoaderSharing() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Gets the value of the classLoaderSharing property.
getClassName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the className property.
getClazz() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Gets the value of the clazz property.
getClazz() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Gets the value of the clazz property.
getClazz() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
Gets the value of the clazz property.
getClazz() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationBean
Gets the value of the clazz property.
getClazz() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dependencies
Gets the value of the clazz property.
getClazz() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
Gets the value of the clazz property.
getClazz() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
Gets the value of the clazz property.
getClazz() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
Gets the value of the clazz property.
getCloned(T) - Method in class uk.org.taverna.scufl2.api.common.AbstractCloneable.Cloning
 
getColumnNames() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Gets the value of the columnNames property.
getColumnRange() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Gets the value of the columnRange property.
getCommand() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the command property.
getComplextype() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
Gets the value of the complextype property.
getComplextype() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
Gets the value of the complextype property.
getComplextypeOrArraytypeOrBasetype() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementsType
Gets the value of the complextypeOrArraytypeOrBasetype property.
getCondition() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CoordinationType
Gets the value of the condition property.
getCondition() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Conditions
Gets the value of the condition property.
getConditions() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Gets the value of the conditions property.
getConditionXML() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
Gets the value of the conditionXML property.
getConfigBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Gets the value of the configBean property.
getConfigBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
Gets the value of the configBean property.
getConfigurable() - Method in class uk.org.taverna.scufl2.validation.correctness.report.MismatchConfigurableTypeProblem
 
getConfigurable() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.MismatchConfigurableTypeProblem
 
getConfigurations() - Method in class uk.org.taverna.scufl2.api.profiles.Profile
Returns the Configurations that this Profile contains.
getConfigure() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Gets the value of the configure property.
getConfigures() - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
Return the Configurable workflow bean that is configured.
getConnectionSettings() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Gets the value of the connectionSettings property.
getConstants(Workflow, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
getConstantStringValue(Processor, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
getConstructor() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
Gets the value of the constructor property.
getContainerXML() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
getContent() - Method in class org.w3._2000._09.xmldsig.CanonicalizationMethodType
Gets the value of the content property.
getContent() - Method in class org.w3._2000._09.xmldsig.DigestMethodType
Gets the value of the content property.
getContent() - Method in class org.w3._2000._09.xmldsig.KeyInfoType
Gets the value of the content property.
getContent() - Method in class org.w3._2000._09.xmldsig.KeyValueType
Gets the value of the content property.
getContent() - Method in class org.w3._2000._09.xmldsig.ObjectType
Gets the value of the content property.
getContent() - Method in class org.w3._2000._09.xmldsig.PGPDataType
Gets the rest of the content model.
getContent() - Method in class org.w3._2000._09.xmldsig.SignatureMethodType
Gets the value of the content property.
getContent() - Method in class org.w3._2000._09.xmldsig.SignaturePropertyType
Gets the value of the content property.
getContent() - Method in class org.w3._2000._09.xmldsig.TransformType
Gets the value of the content property.
getContent() - Method in class org.w3._2001._04.xmlenc.AgreementMethodType
Gets the value of the content property.
getContent() - Method in class org.w3._2001._04.xmlenc.EncryptionMethodType
Gets the value of the content property.
getContent() - Method in class org.w3._2001._04.xmlenc.EncryptionPropertyType
Gets the value of the content property.
getContent() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.AbstractprocessorType
Gets the value of the content property.
getContent() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Gets the value of the content property.
getContent() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Gets the value of the content property.
getContent() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.HTTPHeaders.List
Gets the rest of the content model.
getContent() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Gets the value of the content property.
getContent() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathNamespaceMap.List
Gets the rest of the content model.
getContentTypeForUpdates() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the contentTypeForUpdates property.
getControl() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Gets the value of the control property.
getControl() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Condition
Gets the value of the control property.
getControlLinks() - Method in class uk.org.taverna.scufl2.api.core.Workflow
Returns the ControlLinks.
getCoordination() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Gets the value of the coordination property.
getCreators() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
Gets the value of the creators property.
getCritical() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Gets the value of the critical property.
getCritical() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Gets the value of the critical property.
getCross() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CrossType
Gets the value of the cross property.
getCross() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DotType
Gets the value of the cross property.
getCross() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
Gets the value of the cross property.
getCross() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
Gets the value of the cross property.
getCrossOrDotOrPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.IterationNodeParent
Gets the value of the crossOrDotOrPort property.
getCrossProductOrDotProductOrPortNode() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProductOf
Gets the value of the crossProductOrDotProductOrPortNode property.
getCsvDelimiter() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Gets the value of the csvDelimiter property.
getCurationEventList() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
Gets the value of the curationEventList property.
getCurrent(Class<T>) - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
getCurrentActivity() - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
getCurrentActivity() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getCurrentBase() - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
getCurrentConfigurable() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getCurrentConfiguration() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getCurrentDispatchStack() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getCurrentExtensionParser() - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
getCurrentNode() - Method in class uk.org.taverna.scufl2.api.common.Visitor.VisitorWithPath
Returns the WorkflowBean currently visited.
getCurrentParser() - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
getCurrentPath() - Method in class uk.org.taverna.scufl2.api.common.Visitor.VisitorWithPath
Return the current path of WorkflowBeans.
getCurrentProcessor() - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
getCurrentProcessor() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getCurrentProcessorBinding() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getCurrentProfile() - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
getCurrentProfile() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getCurrentRevision() - Method in interface uk.org.taverna.scufl2.api.annotation.Revisioned
Get the current Revision metadata.
getCurrentRevision() - Method in class uk.org.taverna.scufl2.api.common.AbstractRevisioned
 
getCurrentT2Parser() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getCurrentWorkflow() - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
getCurrentWorkflow() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getCurrentWorkflowBundle() - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
getCurrentWorkflowBundle() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getDataflow() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Workflow
Gets the value of the dataflow property.
getDataLink() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLinkEntry
Gets the value of the dataLink property.
getDatalink() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Gets the value of the datalink property.
getDatalink() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Datalinks
Gets the value of the datalink property.
getDataLinkResolvedDepth(DataLink) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
getDataLinks() - Method in class uk.org.taverna.scufl2.api.core.Workflow
Returns the DataLinks.
getDatalinks() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Gets the value of the datalinks property.
getDataReferenceOrKeyReference() - Method in class org.w3._2001._04.xmlenc.ReferenceList
Gets the value of the dataReferenceOrKeyReference property.
getDatatype() - Method in class org.w3.prov.jaxb.GeneratedAtTime
Gets the value of the datatype property.
getDatatype() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink.MergePosition
Gets the value of the datatype property.
getDatatype() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.GranularPortDepth
Gets the value of the datatype property.
getDatatype() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortDepth
Gets the value of the datatype property.
getDatatype() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode.DesiredDepth
Gets the value of the datatype property.
getDatatype() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.ActivityPosition
Gets the value of the datatype property.
getDatatype() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Required
Gets the value of the datatype property.
getDatatype() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
Gets the value of the datatype property.
getDatatypeName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
Gets the value of the datatypeName property.
getDate() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
Gets the value of the date property.
getDefault(KeyType) - Method in class uk.org.taverna.scufl2.api.impl.LazyMap
 
getDefault() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DefaultsType
Gets the value of the default property.
getDefaults() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the defaults property.
getDependencies() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Gets the value of the dependencies property.
getDependencies() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
Gets the value of the dependencies property.
getDependencies() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Gets the value of the dependencies property.
getDepth() - Method in class uk.org.taverna.scufl2.api.port.AbstractDepthPort
Returns the depth of the Port.
getDepth() - Method in interface uk.org.taverna.scufl2.api.port.DepthPort
Returns the depth of the Port.
getDepth() - Method in class uk.org.taverna.scufl2.validation.correctness.report.IncompatibleGranularDepthProblem
 
getDepth() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.IncompatibleGranularDepthProblem
 
getDepth() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.FlattenlistType
Gets the value of the depth property.
getDepth() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SlicelistType
Gets the value of the depth property.
getDepth() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DepthPort
Gets the value of the depth property.
getDepth() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.PortProduct
Gets the value of the depth property.
getDescription() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Gets the value of the description property.
getDescription() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
Gets the value of the description property.
getDescription() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MetadataType
Gets the value of the description property.
getDescription() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the description property.
getDescription() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the description property.
getDescription() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the description property.
getDesiredDepth() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
getDesiredDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode
Gets the value of the desiredDepth property.
getDeUniLuebeckInbKnowarcUsecasesScriptInputStatic() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.StaticInputs
Gets the value of the deUniLuebeckInbKnowarcUsecasesScriptInputStatic property.
getDeUniLuebeckInbKnowarcUsecasesScriptInputUser() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Entry
Gets the value of the deUniLuebeckInbKnowarcUsecasesScriptInputUser property.
getDeUniLuebeckInbKnowarcUsecasesScriptOutput() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Entry
Gets the value of the deUniLuebeckInbKnowarcUsecasesScriptOutput property.
getDigestMethod() - Method in class org.w3._2000._09.xmldsig.ReferenceType
Gets the value of the digestMethod property.
getDigestValue() - Method in class org.w3._2000._09.xmldsig.ReferenceType
Gets the value of the digestValue property.
getDimension() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
Gets the value of the dimension property.
getDimension() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
Gets the value of the dimension property.
getDispatchLayer() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchStack
Gets the value of the dispatchLayer property.
getDispatchStack() - Method in class uk.org.taverna.scufl2.api.core.Processor
Returns the DispatchStack or null if there is no DispatchStack.
getDispatchStack() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.DispatchStack
Gets the value of the dispatchStack property.
getDispatchStack() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
Gets the value of the dispatchStack property.
getDispatchStack() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Gets the value of the dispatchStack property.
getDispatchStackLayer() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack.DispatchStackLayers
Gets the value of the dispatchStackLayer property.
getDispatchStackLayers() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack
Gets the value of the dispatchStackLayers property.
getDom(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Gets org.w3c.dom.Document for XML file contained in package.
getDot() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CrossType
Gets the value of the dot property.
getDot() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DotType
Gets the value of the dot property.
getDot() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
Gets the value of the dot property.
getDot() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
Gets the value of the dot property.
getDotProductIterationDepth(DotProduct, Map<InputProcessorPort, Integer>) - Method in class uk.org.taverna.scufl2.validation.structural.StructuralValidator
 
getDotProductIterationMismatches() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getDotProductIterationMismatches() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getDotProductOrCrossProduct() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack.IterationStrategies
Gets the value of the dotProductOrCrossProduct property.
getDownStream() - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools.ProcessorSplit
Processors that are downstream from the split point.
getDuplicateNode() - Method in class uk.org.taverna.scufl2.validation.correctness.report.PortMentionedTwiceProblem
 
getDuplicateNode() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.PortMentionedTwiceProblem
 
getElement() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
Gets the value of the element property.
getElement() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dependencies
Gets the value of the element property.
getElements() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Gets the value of the elements property.
getElementtype() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Gets the value of the elementtype property.
getEmptyCellPolicy() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Gets the value of the emptyCellPolicy property.
getEmptyCellValue() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Gets the value of the emptyCellValue property.
getEmptyCrossProducts() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getEmptyCrossProducts() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getEmptyDotProducts() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getEmptyDotProducts() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getEmptyIterationStrategyTopNodeProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getEmptyIterationStrategyTopNodeProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getEncoding() - Method in class org.w3._2000._09.xmldsig.ObjectType
Gets the value of the encoding property.
getEncoding() - Method in class org.w3._2001._04.xmlenc.EncryptedType
Gets the value of the encoding property.
getEncoding() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
Gets the value of the encoding property.
getEncoding() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
Gets the value of the encoding property.
getEncryptedDataOrEncryptedKey() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Encryption
Gets the value of the encryptedDataOrEncryptedKey property.
getEncryption() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Gets the value of the encryption property.
getEncryptionData() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
 
getEncryptionMethod() - Method in class org.w3._2001._04.xmlenc.EncryptedType
Gets the value of the encryptionMethod property.
getEncryptionProperties() - Method in class org.w3._2001._04.xmlenc.EncryptedType
Gets the value of the encryptionProperties property.
getEncryptionProperty() - Method in class org.w3._2001._04.xmlenc.EncryptionPropertiesType
Gets the value of the encryptionProperty property.
getEnd() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
Gets the value of the end property.
getEndpoint() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
Gets the value of the endpoint property.
getEndpoint() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
Gets the value of the endpoint property.
getEntityResolver() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Get EntityResolver to be used in XML Parsers which can resolve content inside the OdfPackage
getEntry() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs
Gets the value of the entry property.
getEntry() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobySecondaries
Gets the value of the entry property.
getEntry() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.EntryMap
Gets the value of the entry property.
getEntry() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNames
Gets the value of the entry property.
getEscapeParameters() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the escapeParameters property.
getEventListener() - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
getException() - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
getException() - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
getException() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getException() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getException() - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
getException() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getException() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getException() - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
getExclude() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetExcludes
Gets the value of the exclude property.
getExcludes() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
Gets the value of the excludes property.
getExecutionTimeoutInSeconds() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the executionTimeoutInSeconds property.
getExponent() - Method in class org.w3._2000._09.xmldsig.RSAKeyValueType
Gets the value of the exponent property.
getExternaltoolid() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Gets the value of the externaltoolid property.
getFailedProcessors() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getFailedProcessors() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getFieldName() - Method in class uk.org.taverna.scufl2.validation.correctness.report.NegativeValueProblem
 
getFieldName() - Method in class uk.org.taverna.scufl2.validation.correctness.report.NonAbsoluteURIProblem
 
getFieldName() - Method in class uk.org.taverna.scufl2.validation.correctness.report.NullFieldProblem
 
getFieldName() - Method in class uk.org.taverna.scufl2.validation.correctness.report.OutOfScopeValueProblem
 
getFieldName() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NegativeValueProblem
 
getFieldName() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NonAbsoluteURIProblem
 
getFieldName() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NullFieldProblem
 
getFieldName() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.OutOfScopeValueProblem
 
getFieldValue() - Method in class uk.org.taverna.scufl2.validation.correctness.report.NegativeValueProblem
 
getFieldValue() - Method in class uk.org.taverna.scufl2.validation.correctness.report.NonAbsoluteURIProblem
 
getFieldValue() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NegativeValueProblem
 
getFieldValue() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NonAbsoluteURIProblem
 
getFileEntries() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Get a OdfFileEntries from the manifest file (i.e.
getFileEntry(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Get an OdfFileEntry for the packagePath NOTE: This method should be better moved to a DOM inherited Manifest class
getFlattenlist() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
Gets the value of the flattenlist property.
getFrom() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.StatechangeType
Gets the value of the from property.
getFrom() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Mapping
Gets the value of the from property.
getFromVersion() - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification
Gets the value of the fromVersion property.
getFullPath() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.RootFile
Gets the value of the fullPath property.
getG() - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Gets the value of the g property.
getGeneratedAtTime() - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource
Gets the value of the generatedAtTime property.
getGeneratedAtTime() - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
getGlobalBaseURI() - Method in interface uk.org.taverna.scufl2.api.common.Root
 
getGlobalBaseURI() - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
getGlobalBaseURI() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Gets the value of the globalBaseURI property.
getGranularDepth() - Method in class uk.org.taverna.scufl2.api.port.AbstractGranularDepthPort
Returns the granular depth of the Port.
getGranularDepth() - Method in interface uk.org.taverna.scufl2.api.port.GranularDepthPort
Returns the granular depth of the Port.
getGranularDepth() - Method in class uk.org.taverna.scufl2.validation.correctness.report.IncompatibleGranularDepthProblem
 
getGranularDepth() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.IncompatibleGranularDepthProblem
 
getGranularDepth() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPort
Gets the value of the granularDepth property.
getGranularPortDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
Gets the value of the granularPortDepth property.
getGranularPortDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
Gets the value of the granularPortDepth property.
getGroup() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Gets the value of the group property.
getGroup() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Raven
Gets the value of the group property.
getGroup() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the group property.
getGroupId() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArtifactType
Gets the value of the groupId property.
getGroupId() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
Gets the value of the groupId property.
getHadOriginalSource() - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource
Gets the value of the hadOriginalSource property.
getHadOriginalSources() - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
getHandledReferenceSchemesOrTranslatedElementTypeOrName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean
Gets the value of the handledReferenceSchemesOrTranslatedElementTypeOrName property.
getHasChange() - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification
Gets the value of the hasChange property.
getHashCode() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
Gets the value of the hashCode property.
getHost() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InfernoType
Gets the value of the host property.
getHost() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Gets the value of the host property.
getHostname() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Gets the value of the hostname property.
getHttpMethod() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the httpMethod property.
getId() - Method in class org.w3._2000._09.xmldsig.KeyInfoType
Gets the value of the id property.
getId() - Method in class org.w3._2000._09.xmldsig.ManifestType
Gets the value of the id property.
getId() - Method in class org.w3._2000._09.xmldsig.ObjectType
Gets the value of the id property.
getId() - Method in class org.w3._2000._09.xmldsig.ReferenceType
Gets the value of the id property.
getId() - Method in class org.w3._2000._09.xmldsig.SignaturePropertiesType
Gets the value of the id property.
getId() - Method in class org.w3._2000._09.xmldsig.SignaturePropertyType
Gets the value of the id property.
getId() - Method in class org.w3._2000._09.xmldsig.SignatureType
Gets the value of the id property.
getId() - Method in class org.w3._2000._09.xmldsig.SignatureValueType
Gets the value of the id property.
getId() - Method in class org.w3._2000._09.xmldsig.SignedInfoType
Gets the value of the id property.
getId() - Method in class org.w3._2001._04.xmlenc.EncryptedType
Gets the value of the id property.
getId() - Method in class org.w3._2001._04.xmlenc.EncryptionPropertiesType
Gets the value of the id property.
getId() - Method in class org.w3._2001._04.xmlenc.EncryptionPropertyType
Gets the value of the id property.
getId() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Gets the value of the id property.
getId() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Gets the value of the id property.
getId() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Gets the value of the id property.
getIdentifier() - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
getIdentifier() - Method in interface uk.org.taverna.scufl2.api.annotation.Revisioned
Returns the identifier of this bean.
getIdentifier() - Method in class uk.org.taverna.scufl2.api.common.AbstractRevisioned
Returns the identifier.
getIdentifierRoot() - Method in class uk.org.taverna.scufl2.api.common.AbstractRevisioned
 
getIdentifierRoot() - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
getIdentifierRoot() - Method in class uk.org.taverna.scufl2.api.core.Workflow
 
getIdentifierRoot() - Method in class uk.org.taverna.scufl2.api.profiles.Profile
 
getIncomingDataLinks(ReceiverPort) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
getIncompatibleGranularDepthProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getIncompatibleGranularDepthProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getIncompleteWorkflows() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getIncompleteWorkflows() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getInitialDelay() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
Gets the value of the initialDelay property.
getInitializationVector() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.Algorithm
 
getInput() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
Gets the value of the input property.
getInput() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MergemodeType
Gets the value of the input property.
getInputActivityPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
Gets the value of the inputActivityPort property.
getInputActivityPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity.InputActivityPort
Gets the value of the inputActivityPort property.
getInputmap() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.AlternateType
Gets the value of the inputmap property.
getInputMap() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Gets the value of the inputMap property.
getInputPort() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InputPortListType
Gets the value of the inputPort property.
getInputPortBinding() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Gets the value of the inputPortBinding property.
getInputPortBinding() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.InputPortBinding
Gets the value of the inputPortBinding property.
getInputPortBindings() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
Returns the bindings for individual input ports of the bound Processor.
getInputPorts() - Method in class uk.org.taverna.scufl2.api.activity.Activity
Returns the InputActivityPorts.
getInputPorts() - Method in interface uk.org.taverna.scufl2.api.common.Ported
Returns the InputPorts.
getInputPorts() - Method in class uk.org.taverna.scufl2.api.core.Processor
Returns the NamedSet of input ports.
getInputPorts() - Method in class uk.org.taverna.scufl2.api.core.Workflow
Returns the InputWorkflowPorts.
getInputPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Gets the value of the inputPorts property.
getInputPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Gets the value of the inputPorts property.
getInputProcessorPort() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
getInputProcessorPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
Gets the value of the inputProcessorPort property.
getInputProcessorPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.InputProcessorPort
Gets the value of the inputProcessorPort property.
getInputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the inputs property.
getInputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Gets the value of the inputs property.
getInputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Gets the value of the inputs property.
getInputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the inputs property.
getInputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
Gets the value of the inputs property.
getInputStream(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Get subcontent as InputStream
getInputStream() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Gets the InputStream containing whole OdfPackage.
getInputSymanticTypes() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Gets the value of the inputSymanticTypes property.
getInputWorkflowPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Gets the value of the inputWorkflowPort property.
getInputWorkflowPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.InputWorkflowPort
Gets the value of the inputWorkflowPort property.
getInt() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterDimensions
Gets the value of the int property.
getInt() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ReturnCodes
Gets the value of the int property.
getInterval() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
Gets the value of the interval property.
getInvocationGroupName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
Gets the value of the invocationGroupName property.
getIterateOverInputPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode
Gets the value of the iterateOverInputPort property.
getIteration() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.IterationStrategyStack
Gets the value of the iteration property.
getIterationCount() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
 
getIterationDepth(IterationStrategyNode, Map<InputProcessorPort, Integer>) - Method in class uk.org.taverna.scufl2.validation.structural.StructuralValidator
 
getIterationStrategies() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack
Gets the value of the iterationStrategies property.
getIterationstrategy() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the iterationstrategy property.
getIterationStrategyStack() - Method in class uk.org.taverna.scufl2.api.core.Processor
Returns the IterationStrategyStack or null if there is no IterationStrategyStack.
getIterationStrategyStack() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
Gets the value of the iterationStrategyStack property.
getIterationStrategyStack() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.IterationStrategyStack
Gets the value of the iterationStrategyStack property.
getIterationStrategyStack() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Gets the value of the iterationStrategyStack property.
getIterator() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CrossType
Gets the value of the iterator property.
getIterator() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DotType
Gets the value of the iterator property.
getIterator() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
Gets the value of the iterator property.
getJ() - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Gets the value of the j property.
getJarfile() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DependenciesType
Gets the value of the jarfile property.
getJavaClass() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
Gets the value of the javaClass property.
getJaxbContext() - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
getJaxbContext() - Method in class uk.org.taverna.scufl2.rdfxml.RevisionParser
 
getJaxbContext() - Static method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
getJAxbContextStatic() - Static method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
getJson() - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
Return the underlying JSON JsonNode which contains the properties set by this configuration.
getJsonAsObjectNode() - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
Return the Configuration.getJson() configuration as an ObjectNode.
getJsonAsString() - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
Return a string representation of the Configuration.getJson() configuration, the string is valid JSON.
getJsonSchema() - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
 
getKeepSessionAlive() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Gets the value of the keepSessionAlive property.
getKey() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MapType
Gets the value of the key property.
getKeyDerivation() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
 
getKeyInfo() - Method in class org.w3._2000._09.xmldsig.SignatureType
Gets the value of the keyInfo property.
getKeyInfo() - Method in class org.w3._2001._04.xmlenc.EncryptedType
Gets the value of the keyInfo property.
getLink() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Gets the value of the link property.
getList() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.HTTPHeaders
Gets the value of the list property.
getList() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathNamespaceMap
Gets the value of the list property.
getLocalDependencies() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the localDependencies property.
getLocalDependencies() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Gets the value of the localDependencies property.
getLocalworkerName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Gets the value of the localworkerName property.
getLocation() - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
getLocation() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig.MartService
Gets the value of the location property.
getLog() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the log property.
getLog() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Gets the value of the log property.
getLsid() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
Gets the value of the lsid property.
getMainIncomingDataLink(ReceiverPort) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
getMainProfile() - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
getMainProfile() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Gets the value of the mainProfile property.
getMainWorkflow() - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
getMainWorkflow() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Gets the value of the mainWorkflow property.
getManifestAsString() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Get Manifest as String NOTE: This functionality should better be moved to a DOM based Manifest class
getManifestEntries() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
 
getMap() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Map
Gets the value of the map property.
getMarshaller() - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
getMartDataset() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
Gets the value of the martDataset property.
getMartService() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
Gets the value of the martService property.
getMaxDelay() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
Gets the value of the maxDelay property.
getMaxinterval() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
Gets the value of the maxinterval property.
getMaxJobs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ParallelizeConfig
Gets the value of the maxJobs property.
getMaxretries() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Gets the value of the maxretries property.
getMaxretries() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Gets the value of the maxretries property.
getMaxRetries() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
Gets the value of the maxRetries property.
getMechanismName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Gets the value of the mechanismName property.
getMechanismName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
Gets the value of the mechanismName property.
getMechanismType() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Gets the value of the mechanismType property.
getMechanismType() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
Gets the value of the mechanismType property.
getMechanismXML() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Gets the value of the mechanismXML property.
getMechanismXML() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
Gets the value of the mechanismXML property.
getMediaType() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.RootFile
Gets the value of the mediaType property.
getMediaType() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
 
getMediaType(String) - Static method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
Get the media type from the given file reference
getMediaType() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Get the media type of the ODF package (equal to media type of ODF root document)
getMediaType() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
 
getMediaTypes() - Method in class uk.org.taverna.scufl2.api.io.structure.StructureReader
 
getMediaTypes() - Method in class uk.org.taverna.scufl2.api.io.structure.StructureWriter
 
getMediaTypes() - Method in interface uk.org.taverna.scufl2.api.io.WorkflowBundleReader
Return the media types that this reader can read.
getMediaTypes() - Method in interface uk.org.taverna.scufl2.api.io.WorkflowBundleWriter
Returns the media types that this writer can handle.
getMediaTypes() - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLReader
 
getMediaTypes() - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
getMediaTypes() - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflReader
 
getMediaTypes() - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
getMergemode() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the mergemode property.
getMergePosition() - Method in class uk.org.taverna.scufl2.api.core.DataLink
Returns the position that this DataLink should join a merge.
getMergePosition() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
Gets the value of the mergePosition property.
getMetadata() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SinkType
Gets the value of the metadata property.
getMetadata() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SourceType
Gets the value of the metadata property.
getMethod() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Gets the value of the method property.
getMethodName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the methodName property.
getMime() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Gets the value of the mime property.
getMime() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
Gets the value of the mime property.
getMimeType() - Method in class org.w3._2000._09.xmldsig.ObjectType
Gets the value of the mimeType property.
getMimeType() - Method in class org.w3._2001._04.xmlenc.EncryptedType
Gets the value of the mimeType property.
getMimeType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MimeTypes
Gets the value of the mimeType property.
getMimeTypes() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MetadataType
Gets the value of the mimeTypes property.
getMismatchConfigurableTypeProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getMismatchConfigurableTypeProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getMissingIterationStrategyStacks() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getMissingIterationStrategyStacks() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getMissingMainIncomingDataLinks() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getMissingMainIncomingDataLinks() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getMobyEndpoint() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
Gets the value of the mobyEndpoint property.
getMobyEndpoint() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
Gets the value of the mobyEndpoint property.
getMobyEndpoint() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
Gets the value of the mobyEndpoint property.
getMode() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MergemodeType
Gets the value of the mode property.
getMode() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SinkType
Gets the value of the mode property.
getModification() - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification.HasChange
Gets the value of the modification property.
getModificationsOf() - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
getModulus() - Method in class org.w3._2000._09.xmldsig.RSAKeyValueType
Gets the value of the modulus property.
getName() - Method in class uk.org.taverna.scufl2.api.common.AbstractNamed
 
getName() - Method in interface uk.org.taverna.scufl2.api.common.Named
Returns the name of the WorkflowBean.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputActivityPort
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputProcessorPort
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputWorkflowPort
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputWorkflowPort
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.Algorithm
 
getName() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
 
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ClassType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CoordinationType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DefaultType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.IteratorType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SinkType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SourceType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplatePortReferenceType
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Port
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.PortProduct
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Property
Gets the value of the name property.
getName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
Gets the value of the name property.
getNames() - Method in class uk.org.taverna.scufl2.api.common.NamedSet
Returns a set of the names of the elements in this set.
getNegativeValueProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getNegativeValueProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getNetSfTavernaRavenRepositoryBasicArtifact() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ArtifactDependencies
Gets the value of the netSfTavernaRavenRepositoryBasicArtifact property.
getNetSfTavernaT2ActivitiesRshellRShellPortSymanticTypeBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType
Gets the value of the netSfTavernaT2ActivitiesRshellRShellPortSymanticTypeBean property.
getNetSfTavernaT2AnnotationAnnotationAssertionImpl() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl
Gets the value of the netSfTavernaT2AnnotationAnnotationAssertionImpl property.
getNetSfTavernaT2AnnotationAnnotationChainImpl() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
Gets the value of the netSfTavernaT2AnnotationAnnotationChainImpl property.
getNetSfTavernaT2WorkflowmodelProcessorActivityConfigActivityInputPortDefinitionBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputPorts
Gets the value of the netSfTavernaT2WorkflowmodelProcessorActivityConfigActivityInputPortDefinitionBean property.
getNetSfTavernaT2WorkflowmodelProcessorActivityConfigActivityOutputPortDefinitionBean() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityOutputPorts
Gets the value of the netSfTavernaT2WorkflowmodelProcessorActivityConfigActivityOutputPortDefinitionBean property.
getNewRVersion() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Gets the value of the newRVersion property.
getNonAbsoluteURIProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getNonAbsoluteURIProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getNullFieldProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getNullFieldProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getObject() - Method in class org.w3._2000._09.xmldsig.SignatureType
Gets the value of the object property.
getOperation() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Gets the value of the operation property.
getOperation() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
Gets the value of the operation property.
getOptional() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Gets the value of the optional property.
getOptional() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Gets the value of the optional property.
getOptional() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Gets the value of the optional property.
getOtherAttributes() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Encryption
Gets a map that contains attributes that aren't bound to any typed property on this class.
getOtherAttributes() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Gets a map that contains attributes that aren't bound to any typed property on this class.
getOtherAttributes() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Relationships
Gets a map that contains attributes that aren't bound to any typed property on this class.
getOtherAttributes() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.RootFiles
Gets a map that contains attributes that aren't bound to any typed property on this class.
getOtherAttributes() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Signatures
Gets a map that contains attributes that aren't bound to any typed property on this class.
getOtherAttributes() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Relationship
Gets a map that contains attributes that aren't bound to any typed property on this class.
getOtherAttributes() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.RootFile
Gets a map that contains attributes that aren't bound to any typed property on this class.
getOtherAttributes() - Method in class org.w3._2001._04.xmlenc.EncryptionPropertyType
Gets a map that contains attributes that aren't bound to any typed property on this class.
getOtherHTTPHeaders() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the otherHTTPHeaders property.
getOutgoingDataFormat() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the outgoingDataFormat property.
getOutgoingDataLinks(SenderPort) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
getOutOfScopeValueProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getOutOfScopeValueProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getOutput() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
Gets the value of the output property.
getOutputActivityPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
Gets the value of the outputActivityPort property.
getOutputActivityPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity.OutputActivityPort
Gets the value of the outputActivityPort property.
getOutputFormat() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Gets the value of the outputFormat property.
getOutputmap() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.AlternateType
Gets the value of the outputmap property.
getOutputMap() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Gets the value of the outputMap property.
getOutputPort() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.OutputPortListType
Gets the value of the outputPort property.
getOutputPortBinding() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Gets the value of the outputPortBinding property.
getOutputPortBinding() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.OutputPortBinding
Gets the value of the outputPortBinding property.
getOutputPortBindings() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
Returns the bindings for individual output ports of the bound Processor.
getOutputPorts() - Method in class uk.org.taverna.scufl2.api.activity.Activity
Returns the OutputActivityPorts.
getOutputPorts() - Method in interface uk.org.taverna.scufl2.api.common.Ported
Returns the OutputPorts.
getOutputPorts() - Method in class uk.org.taverna.scufl2.api.core.Processor
Returns the NamedSet of output ports.
getOutputPorts() - Method in class uk.org.taverna.scufl2.api.core.Workflow
Returns the OutputWorkflowPorts.
getOutputPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Gets the value of the outputPorts property.
getOutputPorts() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Gets the value of the outputPorts property.
getOutputProcessorPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
Gets the value of the outputProcessorPort property.
getOutputProcessorPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.OutputProcessorPort
Gets the value of the outputProcessorPort property.
getOutputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the outputs property.
getOutputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Gets the value of the outputs property.
getOutputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Gets the value of the outputs property.
getOutputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the outputs property.
getOutputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
Gets the value of the outputs property.
getOutputSymanticTypes() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Gets the value of the outputSymanticTypes property.
getOutputWorkflowPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Gets the value of the outputWorkflowPort property.
getOutputWorkflowPort() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.OutputWorkflowPort
Gets the value of the outputWorkflowPort property.
getP() - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Gets the value of the p property.
getPackageMediaType() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
getParameter() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Gets the value of the parameter property.
getParameter() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
Gets the value of the parameter property.
getParameterDimensions() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the parameterDimensions property.
getParameterNames() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the parameterNames property.
getParameterTypes() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the parameterTypes property.
getParent() - Method in class uk.org.taverna.scufl2.api.activity.Activity
 
getParent() - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
getParent() - Method in interface uk.org.taverna.scufl2.api.common.Child
Returns the parent of this workflow bean, or null if it is orphan.
getParent() - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
 
getParent() - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
 
getParent() - Method in class uk.org.taverna.scufl2.api.core.DataLink
Returns the parent Workflow of null if this DataLink is an orphan.
getParent() - Method in class uk.org.taverna.scufl2.api.core.Processor
Returns the parent Workflow of null if this Processor is an orphan.
getParent() - Method in class uk.org.taverna.scufl2.api.core.Workflow
 
getParent() - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStack
 
getParent() - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStackLayer
 
getParent() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.CrossProduct
 
getParent() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.DotProduct
 
getParent() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.IterationStrategyStack
 
getParent() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
getParent() - Method in class uk.org.taverna.scufl2.api.port.InputActivityPort
 
getParent() - Method in class uk.org.taverna.scufl2.api.port.InputProcessorPort
 
getParent() - Method in class uk.org.taverna.scufl2.api.port.InputWorkflowPort
 
getParent() - Method in class uk.org.taverna.scufl2.api.port.OutputActivityPort
 
getParent() - Method in class uk.org.taverna.scufl2.api.port.OutputProcessorPort
 
getParent() - Method in class uk.org.taverna.scufl2.api.port.OutputWorkflowPort
 
getParent() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
 
getParent() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorInputPortBinding
 
getParent() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
 
getParent() - Method in class uk.org.taverna.scufl2.api.profiles.Profile
 
getParser() - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflReader
 
getParser() - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
getParserState() - Method in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
getParserState() - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.AbstractExtensionParser
 
getParserState() - Method in interface uk.org.taverna.scufl2.translator.scufl.ScuflExtensionParser
 
getParseType() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack.DispatchStackLayers
Gets the value of the parseType property.
getParseType() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack.IterationStrategies
Gets the value of the parseType property.
getParseType() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProductOf
Gets the value of the parseType property.
getPassword() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Gets the value of the password property.
getPassword() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Gets the value of the password property.
getPath() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
 
getPath() - Method in enum uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage.OdfFile
 
getPath() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
 
getPath() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
Gets the value of the path property.
getPgenCounter() - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Gets the value of the pgenCounter property.
getPollingBackoff() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
Gets the value of the pollingBackoff property.
getPollingInterval() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
Gets the value of the pollingInterval property.
getPollingIntervalMax() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
Gets the value of the pollingIntervalMax property.
getPort() - Method in class uk.org.taverna.scufl2.validation.correctness.report.PortMissingFromIterationStrategyStackProblem
 
getPort() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.PortMissingFromIterationStrategyStackProblem
 
getPort() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InfernoType
Gets the value of the port property.
getPort() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Gets the value of the port property.
getPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedGranularDepthPorts
Gets the value of the port property.
getPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedPorts
Gets the value of the port property.
getPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DepthPorts
Gets the value of the port property.
getPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPorts
Gets the value of the port property.
getPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Link
Gets the value of the port property.
getPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Ports
Gets the value of the port property.
getPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Gets the value of the port property.
getPortDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputActivityPort
Gets the value of the portDepth property.
getPortDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputProcessorPort
Gets the value of the portDepth property.
getPortDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputWorkflowPort
Gets the value of the portDepth property.
getPortDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
Gets the value of the portDepth property.
getPortDepth() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
Gets the value of the portDepth property.
getPortMentionedTwiceProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getPortMentionedTwiceProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getPortMissingFromIterationStrategyStackProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getPortMissingFromIterationStrategyStackProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getPortResolvedDepth(Port) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
getPreDeclaredNamespaceUris() - Method in class uk.org.taverna.scufl2.rdfxml.impl.NamespacePrefixMapperJAXB_RI
 
getPreferredPrefix(String, String, boolean) - Method in class uk.org.taverna.scufl2.rdfxml.impl.NamespacePrefixMapperJAXB_RI
 
getPreparingTimeoutInSeconds() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the preparingTimeoutInSeconds property.
getPreviousRevision() - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
getProcessor() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Gets the value of the processor property.
getProcessor() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.Processor
Gets the value of the processor property.
getProcessor() - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
getProcessor() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Gets the value of the processor property.
getProcessor() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Link
Gets the value of the processor property.
getProcessor() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processors
Gets the value of the processor property.
getProcessorBinding() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
Gets the value of the processorBinding property.
getProcessorBindings() - Method in class uk.org.taverna.scufl2.api.profiles.Profile
Return the set of bindings for individual Processors.
getProcessorElement() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the processorElement property.
getProcessors() - Method in class uk.org.taverna.scufl2.api.core.Workflow
Returns the Processors.
getProcessors() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Gets the value of the processors property.
getProducedBy() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Workflow
Gets the value of the producedBy property.
getProductOf() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.CrossProduct
Gets the value of the productOf property.
getProductOf() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DotProduct
Gets the value of the productOf property.
getProfile() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Gets the value of the profile property.
getProfile() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle.Profile
Gets the value of the profile property.
getProfile() - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
getProfilePosition() - Method in class uk.org.taverna.scufl2.api.profiles.Profile
Return the suggested position of this profile within the WorkflowBundle.
getProfiles() - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
getProperties() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
Gets the value of the properties property.
getProperty() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Properties
Gets the value of the property property.
getQ() - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Gets the value of the q property.
getQname() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Gets the value of the qname property.
getQname() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Gets the value of the qname property.
getQname() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Gets the value of the qname property.
getQuery() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
Gets the value of the query property.
getQueueDeny() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the queueDeny property.
getQueuePreferred() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the queuePreferred property.
getRaven() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Gets the value of the raven property.
getRaven() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
Gets the value of the raven property.
getReaderForMediaType(String) - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Returns a WorkflowBundleReader for the specified media type.
getReaders() - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Returns all the available WorkflowBundleReaders.
getReceiveFrom() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
Gets the value of the receiveFrom property.
getReceivesFrom() - Method in class uk.org.taverna.scufl2.api.core.DataLink
Returns the SenderPort that this DataLink receives data from.
getRecipient() - Method in class org.w3._2001._04.xmlenc.EncryptedKeyType
Gets the value of the recipient property.
getRef() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataflowConfig
Gets the value of the ref property.
getReference() - Method in class org.w3._2000._09.xmldsig.ManifestType
Gets the value of the reference property.
getReference() - Method in class org.w3._2000._09.xmldsig.SignedInfoType
Gets the value of the reference property.
getReference() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
Gets the value of the reference property.
getReferenceList() - Method in class org.w3._2001._04.xmlenc.EncryptedKeyType
Gets the value of the referenceList property.
getRegistryEndpoint() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
Gets the value of the registryEndpoint property.
getRelatedResource() - Method in class org.purl.wf4ever.roevo.jaxb.Change
Gets the value of the relatedResource property.
getRelationships() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Gets the value of the relationships property.
getRemoval() - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification.HasChange
Gets the value of the removal property.
getRemovalOf() - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
getRepositories() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Gets the value of the repositories property.
getRepositories() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
Gets the value of the repositories property.
getRepository() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RepositoriesType
Gets the value of the repository property.
getRepositoryUrl() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Gets the value of the repositoryUrl property.
getRepositoryUrl() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
Gets the value of the repositoryUrl property.
getREs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the rEs property.
getResource() - Method in class org.w3._1999._02._22_rdf_syntax_ns.Resource
Gets the value of the resource property.
getResource() - Method in class org.w3._1999._02._22_rdf_syntax_ns.Type
Gets the value of the resource property.
getResource() - Method in class org.w3._2000._01.rdf_schema.Domain
Gets the value of the resource property.
getResource() - Method in class org.w3._2000._01.rdf_schema.Range
Gets the value of the resource property.
getResource() - Method in class org.w3._2000._01.rdf_schema.SeeAlso
Gets the value of the resource property.
getResource() - Method in class org.w3._2000._01.rdf_schema.SubClassOf
Gets the value of the resource property.
getResource() - Method in class org.w3._2000._01.rdf_schema.SubPropertyOf
Gets the value of the resource property.
getResource() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ConfigurationType
Gets the value of the resource property.
getResourceAsBytes(String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
getResourceAsInputStream(String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
getResourceAsString(String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
getResourceEntry(String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
getResources() - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
getRetrybackoff() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Gets the value of the retrybackoff property.
getRetrybackoff() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Gets the value of the retrybackoff property.
getRetrydelay() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Gets the value of the retrydelay property.
getRetrydelay() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Gets the value of the retrydelay property.
getReturnDimension() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the returnDimension property.
getReturnType() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the returnType property.
getRole() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Gets the value of the role property.
getRootFiles(Container) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
getRootFiles() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
getRootFilesOrAny() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Gets the value of the rootFilesOrAny property.
getRowRange() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Gets the value of the rowRange property.
getRshellInputPort() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortListType
Gets the value of the rshellInputPort property.
getRshellOutputPort() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortListType
Gets the value of the rshellOutputPort property.
getRVersion() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Gets the value of the rVersion property.
getSalt() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
 
getScript() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Gets the value of the script property.
getScript() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Gets the value of the script property.
getScriptvalue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
Gets the value of the scriptvalue property.
getScuflExtensionParsers() - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
getSecondaries() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
Gets the value of the secondaries property.
getSecurityProfile() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
Gets the value of the securityProfile property.
getSeeAlso() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Gets the value of the seeAlso property.
getSeeAlso() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.SeeAlsoType
Gets the value of the seeAlso property.
getSeeAlso() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Gets the value of the seeAlso property.
getSeeAlso() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Gets the value of the seeAlso property.
getSeed() - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Gets the value of the seed property.
getSemanticType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MetadataType
Gets the value of the semanticType property.
getSendsTo() - Method in class uk.org.taverna.scufl2.api.core.DataLink
Returns the ReceiverPort that this DataLink sends data to.
getSendTo() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
Gets the value of the sendTo property.
getSerializedAt() - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
getSerializedBy() - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
getService() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InfernoType
Gets the value of the service property.
getServiceName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
Gets the value of the serviceName property.
getServiceName() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
Gets the value of the serviceName property.
getServiceName() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
Gets the value of the serviceName property.
getServiceType() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
Gets the value of the serviceType property.
getShowActualUrlPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the showActualUrlPort property.
getShowResponseHeadersPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the showResponseHeadersPort property.
getSignature() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Signatures
Gets the value of the signature property.
getSignatureMethod() - Method in class org.w3._2000._09.xmldsig.SignedInfoType
Gets the value of the signatureMethod property.
getSignatureProperty() - Method in class org.w3._2000._09.xmldsig.SignaturePropertiesType
Gets the value of the signatureProperty property.
getSignatures() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Gets the value of the signatures property.
getSignatureValue() - Method in class org.w3._2000._09.xmldsig.SignatureType
Gets the value of the signatureValue property.
getSignedInfo() - Method in class org.w3._2000._09.xmldsig.SignatureType
Gets the value of the signedInfo property.
getSink() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
Gets the value of the sink property.
getSink() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Gets the value of the sink property.
getSink() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataLink
Gets the value of the sink property.
getSize() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
get the size or -1 if not set
getSize() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
 
getSlicelist() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
Gets the value of the slicelist property.
getSource() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
Gets the value of the source property.
getSource() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Gets the value of the source property.
getSource() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataLink
Gets the value of the source property.
getSPKISexpAndAny() - Method in class org.w3._2000._09.xmldsig.SPKIDataType
Gets the value of the spkiSexpAndAny property.
getSplitPoint() - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools.ProcessorSplit
Processor that was used as a split point.
getStack() - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
getStart() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
Gets the value of the start property.
getState() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionType
Gets the value of the state property.
getStatechange() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ActionType
Gets the value of the statechange property.
getStatic() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
Gets the value of the static property.
getStaticInputs() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the staticInputs property.
getStrategy() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Iteration
Gets the value of the strategy property.
getString() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
Gets the value of the string property.
getString() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
Gets the value of the string property.
getString() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterNames
Gets the value of the string property.
getString() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterTypes
Gets the value of the string property.
getString() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
Gets the value of the string property.
getString() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyEntry
Gets the value of the string property.
getString() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dependencies
Gets the value of the string property.
getString() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Entry
Gets the value of the string property.
getString() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LocalDependencies
Gets the value of the string property.
getString() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNameEntry
Gets the value of the string property.
getSymanticType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
Gets the value of the symanticType property.
getSymanticType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
Gets the value of the symanticType property.
getSymanticType() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
Gets the value of the symanticType property.
getSyntactictype() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
Gets the value of the syntactictype property.
getSyntactictype() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
Gets the value of the syntactictype property.
getSyntacticType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InputPortType
Gets the value of the syntacticType property.
getSyntacticType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.OutputPortType
Gets the value of the syntacticType property.
getSyntacticType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
Gets the value of the syntacticType property.
getSyntacticType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
Gets the value of the syntacticType property.
getT2FlowParser() - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
getT2Parser(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
getT2Parsers() - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
getTag() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Gets the value of the tag property.
getTag() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Gets the value of the tag property.
getTags() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the tags property.
getTarget() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Relationship
Gets the value of the target property.
getTarget() - Method in class org.w3._2000._09.xmldsig.SignaturePropertyType
Gets the value of the target property.
getTarget() - Method in class org.w3._2001._04.xmlenc.EncryptionPropertyType
Gets the value of the target property.
getTarget() - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
getTarget() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ActionType
Gets the value of the target property.
getTarget() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionType
Gets the value of the target property.
getTarget() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Condition
Gets the value of the target property.
getTemplate() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the template property.
getTemplateLiteralOrTemplatePortReference() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplateType
Gets the value of the templateLiteralOrTemplatePortReference property.
getTestLocal() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the testLocal property.
getTitle() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
Gets the value of the title property.
getTo() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.StatechangeType
Gets the value of the to property.
getTo() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Mapping
Gets the value of the to property.
getTransform() - Method in class org.w3._2000._09.xmldsig.TransformsType
Gets the value of the transform property.
getTransform() - Method in class org.w3._2001._04.xmlenc.TransformsType
Gets the value of the transform property.
getTransformer() - Static method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
getTransforms() - Method in class org.w3._2000._09.xmldsig.ReferenceType
Gets the value of the transforms property.
getTransforms() - Method in class org.w3._2000._09.xmldsig.RetrievalMethodType
Gets the value of the transforms property.
getTransforms() - Method in class org.w3._2001._04.xmlenc.CipherReferenceType
Gets the value of the transforms property.
getType() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Relationship
Gets the value of the type property.
getType() - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification
Gets the value of the type property.
getType() - Method in class org.w3._2000._09.xmldsig.ReferenceType
Gets the value of the type property.
getType() - Method in class org.w3._2000._09.xmldsig.RetrievalMethodType
Gets the value of the type property.
getType() - Method in class org.w3._2001._04.xmlenc.EncryptedType
Gets the value of the type property.
getType() - Method in class uk.org.taverna.scufl2.api.activity.Activity
Returns the type of the Activity.
getType() - Method in interface uk.org.taverna.scufl2.api.common.Typed
Returns the type of the WorkflowBean.
getType() - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
Return the type of the Configuration.
getType() - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStack
TODO find out what this is for
getType() - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStackLayer
Returns the type of the DispatchStackLayer.
getType() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
Gets the value of the type property.
getType() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Gets the value of the type property.
getType() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack
Gets the value of the type property.
getType() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStackLayer
Gets the value of the type property.
getType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
Gets the value of the type property.
getType() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
Gets the value of the type property.
getType() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Link
Gets the value of the type property.
getTypename() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Gets the value of the typename property.
getTypename() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Gets the value of the typename property.
getTypename() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Gets the value of the typename property.
getUcfPackage() - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
getUcfPackage() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
 
getUnbounded() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Gets the value of the unbounded property.
getUnbounded() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Gets the value of the unbounded property.
getUnbounded() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Gets the value of the unbounded property.
getUnconnected() - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools.ProcessorSplit
Processors that are unconnected to the split point.
getUnmarshaller() - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
getUnmarshaller() - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
getUnrecognizedIterationStrategyNodes() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getUnrecognizedIterationStrategyNodes() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getUnresolvedOutputs() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getUnresolvedOutputs() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getUnresolvedProcessors() - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
getUnresolvedProcessors() - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
getUntilFinished() - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
Returns the Processor that controls the block.
getUntilFinished() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Blocking
Gets the value of the untilFinished property.
getUpStream() - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools.ProcessorSplit
Processors that are upstream from the split point.
getURI() - Method in class org.w3._2000._09.xmldsig.ReferenceType
Gets the value of the uri property.
getURI() - Method in class org.w3._2000._09.xmldsig.RetrievalMethodType
Gets the value of the uri property.
getURI() - Method in class org.w3._2001._04.xmlenc.CipherReferenceType
Gets the value of the uri property.
getURI() - Method in class org.w3._2001._04.xmlenc.ReferenceType
Gets the value of the uri property.
getURIResolver() - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Get URIResolver to be used in XSL Transformations which can resolve content inside the OdfPackage
getUriToBean() - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
getUriTools() - Static method in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
getUriTools() - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.DataflowActivityParser
 
getUrl() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Gets the value of the url property.
getUrlSignature() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the urlSignature property.
getUseCaseDescription() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Gets the value of the useCaseDescription property.
getUsecaseid() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
Gets the value of the usecaseid property.
getUsecaseid() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the usecaseid property.
getUsername() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Gets the value of the username property.
getUsername() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Gets the value of the username property.
getValidatorState() - Method in class uk.org.taverna.scufl2.validation.structural.StructuralValidator
 
getValidReturnCodes() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the validReturnCodes property.
getValue() - Method in class org.w3._2000._09.xmldsig.SignatureValueType
Gets the value of the value property.
getValue() - Method in class org.w3.prov.jaxb.GeneratedAtTime
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink.MergePosition
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.GranularPortDepth
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortDepth
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode.DesiredDepth
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.ActivityPosition
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.validation.correctness.report.OutOfScopeValueProblem
 
getValue() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.OutOfScopeValueProblem
 
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArticleNameType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.AuthorityNameType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionStateType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DatatypeType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DefaultType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DescriptionType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.EndpointType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.HostType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InputPortType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.JarfileType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MapType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MimeTypeType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MobyEndpointType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.NodeType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.OperationType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.OutputPortType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.PortType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RepositoryType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScriptvalueType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SemanticTypeType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ServiceNameType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ServiceType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.StatusCodeType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.StringconstantType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.TargetType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplateLiteralType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.WsdlType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Property
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
Gets the value of the value property.
getValue() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.StringConstantConfig
Gets the value of the value property.
getVersion() - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Gets the value of the version property.
getVersion() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArtifactType
Gets the value of the version property.
getVersion() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Gets the value of the version property.
getVersion() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
Gets the value of the version property.
getVersion() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Raven
Gets the value of the version property.
getVersion() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Workflow
Gets the value of the version property.
getWasAttributedTo() - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource
Gets the value of the wasAttributedTo property.
getWasAttributedTo() - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
getWasChangedBy() - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource
Gets the value of the wasChangedBy property.
getWasRevisionOf() - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource
Gets the value of the wasRevisionOf property.
getWfBundle() - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
getWorkers() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Gets the value of the workers property.
getWorkflow() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Gets the value of the workflow property.
getWorkflow() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle.Workflow
Gets the value of the workflow property.
getWorkflow() - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
getWorkflowBundle() - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
getWorkflowdescription() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Gets the value of the workflowdescription property.
getWorkflowIdentifier() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Gets the value of the workflowIdentifier property.
getWorkflows() - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
getWrapped() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Gets the value of the wrapped property.
getWrapped() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Gets the value of the wrapped property.
getWrapped() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Gets the value of the wrapped property.
getWrappedTypeXML() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
Gets the value of the wrappedTypeXML property.
getWriterForMediaType(String) - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Returns a WorkflowBundleWriter for the specified media type.
getWriters() - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Returns all the available WorkflowBundleWriters.
getWrongParentProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
getWrongParentProblems() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
getWsdl() - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Gets the value of the wsdl property.
getWsdl() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
Gets the value of the wsdl property.
getX509IssuerName() - Method in class org.w3._2000._09.xmldsig.X509IssuerSerialType
Gets the value of the x509IssuerName property.
getX509IssuerSerialOrX509SKIOrX509SubjectName() - Method in class org.w3._2000._09.xmldsig.X509DataType
Gets the value of the x509IssuerSerialOrX509SKIOrX509SubjectName property.
getX509SerialNumber() - Method in class org.w3._2000._09.xmldsig.X509IssuerSerialType
Gets the value of the x509SerialNumber property.
getXmlDocument() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
Gets the value of the xmlDocument property.
getXpathExpression() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
Gets the value of the xpathExpression property.
getXpathNamespaceMap() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
Gets the value of the xpathNamespaceMap property.
getY() - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Gets the value of the y property.
globalBaseURI - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
 
granularDepth - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPort
 
GranularDepthPort - Interface in uk.org.taverna.scufl2.api.port
 
GranularDepthPort - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for GranularDepthPort complex type.
GranularDepthPort() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPort
 
GranularDepthPorts - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of ports that have both depth and granular depth.
GranularDepthPorts() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPorts
 
GranularPortDepth - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
GranularPortDepth() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.GranularPortDepth
 
granularPortDepth - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
 
granularPortDepth - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
 
group - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
 
Group - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for Group complex type.
Group() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
 
group - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Raven
 
group - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
groupId - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArtifactType
 
groupId - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
 
guessMediaTypeForSignature(byte[]) - Method in class uk.org.taverna.scufl2.api.io.structure.StructureReader
 
guessMediaTypeForSignature(byte[]) - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Attempt to guess the media type for a stream or file that starts with these bytes.
guessMediaTypeForSignature(byte[]) - Method in interface uk.org.taverna.scufl2.api.io.WorkflowBundleReader
Attempt to guess the media type for a stream or file that starts with these bytes.
guessMediaTypeForSignature(byte[]) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLReader
 
guessMediaTypeForSignature(byte[]) - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflReader
 
guessMediaTypeForSignature(byte[]) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 

H

HAD_ORIGINAL_SOURCE - Static variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
hadOriginalSource - Variable in class org.purl.wf4ever.roevo.jaxb.VersionableResource
 
handledReferenceSchemesOrTranslatedElementTypeOrName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean
 
hasChange - Variable in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification
 
hasDom(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
returns true if a DOM tree has been requested for given sub-content of OdfPackage
hashCode() - Method in class uk.org.taverna.scufl2.api.common.AbstractNamed
 
hashCode() - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
hashCode() - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
 
hashCode() - Method in class uk.org.taverna.scufl2.api.core.DataLink
 
hashCode() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
hashCode() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
 
hashCode - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
 
headSet(T) - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
HISTORY - Static variable in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
host - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.InfernoType
 
host - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
 
HostInstitution - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for HostInstitution complex type.
HostInstitution() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.HostInstitution
 
hostname - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
 
HostType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for hostType complex type.
HostType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.HostType
 
HTTP_HEADERS_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
 
HTTP_METHODS_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
 
HTTP_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
 
HTTPHeaders - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for HTTPHeaders complex type.
HTTPHeaders() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.HTTPHeaders
 
HTTPHeaders.List - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for anonymous complex type.
HTTPHeaders.List() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.HTTPHeaders.List
 
httpMethod - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 

I

id - Variable in class org.w3._2000._09.xmldsig.KeyInfoType
 
id - Variable in class org.w3._2000._09.xmldsig.ManifestType
 
id - Variable in class org.w3._2000._09.xmldsig.ObjectType
 
id - Variable in class org.w3._2000._09.xmldsig.ReferenceType
 
id - Variable in class org.w3._2000._09.xmldsig.SignaturePropertiesType
 
id - Variable in class org.w3._2000._09.xmldsig.SignaturePropertyType
 
id - Variable in class org.w3._2000._09.xmldsig.SignatureType
 
id - Variable in class org.w3._2000._09.xmldsig.SignatureValueType
 
id - Variable in class org.w3._2000._09.xmldsig.SignedInfoType
 
id - Variable in class org.w3._2001._04.xmlenc.EncryptedType
 
id - Variable in class org.w3._2001._04.xmlenc.EncryptionPropertiesType
 
id - Variable in class org.w3._2001._04.xmlenc.EncryptionPropertyType
 
id - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
 
id - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
 
id - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
 
IdentificationAssertion - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for IdentificationAssertion complex type.
IdentificationAssertion() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.IdentificationAssertion
 
ignoreBlankRows - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
includeStdErr - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
includeStdIn - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
includeStdOut - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
incompatibleGranularDepth(AbstractGranularDepthPort, Integer, Integer) - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
incompatibleGranularDepth(AbstractGranularDepthPort, Integer, Integer) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
incompatibleGranularDepth(AbstractGranularDepthPort, Integer, Integer) - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
incompatibleGranularDepth(AbstractGranularDepthPort, Integer, Integer) - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
IncompatibleGranularDepthProblem - Class in uk.org.taverna.scufl2.validation.correctness.report
 
IncompatibleGranularDepthProblem(AbstractGranularDepthPort, Integer, Integer) - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.IncompatibleGranularDepthProblem
 
incompleteWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
incompleteWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
incompleteWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
incompleteWorkflow(Workflow) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
IncompleteWorkflowProblem - Class in uk.org.taverna.scufl2.validation.structural.report
 
IncompleteWorkflowProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.structural.report.IncompleteWorkflowProblem
 
InfernoType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for infernoType complex type.
InfernoType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.InfernoType
 
INITIAL_DELAY - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser.Defaults
 
initialDelay - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
 
input - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
 
input - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MergemodeType
 
InputActivityPort - Class in uk.org.taverna.scufl2.api.port
An InputActivityPort is a that inputs data to an Activity.
InputActivityPort() - Constructor for class uk.org.taverna.scufl2.api.port.InputActivityPort
Constructs an InputActivityPort with a random UUID as the name.
InputActivityPort(Activity, String) - Constructor for class uk.org.taverna.scufl2.api.port.InputActivityPort
Constructs an InputPort for the specified Activity with the specified name.
inputActivityPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
 
inputActivityPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity.InputActivityPort
 
InputActivityPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
InputActivityPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.InputActivityPort
 
inputmap - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.AlternateType
 
inputMap - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
 
InputPort - Interface in uk.org.taverna.scufl2.api.port
A Port that specifies inputs to a Workflow component.
inputPort - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.InputPortListType
 
InputPortBinding - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for InputPortBinding complex type.
InputPortBinding() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.InputPortBinding
 
inputPortBinding - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
 
inputPortBinding - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.InputPortBinding
 
InputPortListType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for inputPortListType complex type.
InputPortListType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.InputPortListType
 
inputPorts - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
 
inputPorts - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
 
InputPortType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for inputPortType complex type.
InputPortType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.InputPortType
 
InputProcessorPort - Class in uk.org.taverna.scufl2.api.port
An InputProcessorPort is a that inputs data to a Processor.
InputProcessorPort() - Constructor for class uk.org.taverna.scufl2.api.port.InputProcessorPort
Constructs an InputProcessorPort with a random UUID as the name.
InputProcessorPort(Processor, String) - Constructor for class uk.org.taverna.scufl2.api.port.InputProcessorPort
Constructs an InputProcessorPort for the specified Processor with the specified name.
InputProcessorPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
InputProcessorPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.InputProcessorPort
 
inputProcessorPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
 
inputProcessorPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.InputProcessorPort
 
inputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
inputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
 
inputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
 
inputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
inputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
 
inputSymanticTypes - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
 
InputWorkflowPort - Class in uk.org.taverna.scufl2.api.port
An InputWorkflowPort is a that inputs data to a Workflow.
InputWorkflowPort() - Constructor for class uk.org.taverna.scufl2.api.port.InputWorkflowPort
Constructs an InputWorkflowPort with a random UUID as the name.
InputWorkflowPort(Workflow, String) - Constructor for class uk.org.taverna.scufl2.api.port.InputWorkflowPort
Constructs an InputWorkflowPort for the specified Workflow with the specified name.
InputWorkflowPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
InputWorkflowPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.InputWorkflowPort
 
inputWorkflowPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
 
inputWorkflowPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.InputWorkflowPort
 
insert(Document, String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Insert DOM tree into OdfPackage.
insert(URI, String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Inserts InputStream into an OdfPackage.
insert(InputStream, String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Inserts InputStream into an OdfPackage.
insert(byte[], String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Insert byte array into OdfPackage.
insertOutputStream(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Insert the OutputStream for into OdfPackage.
insertOutputStream(String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Insert the OutputStream - to be filled after method - when stream is closed into OdfPackage.
interval - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
 
invocationGroupName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
 
InvokeParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
 
InvokeParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.InvokeParser
 
isAllRows() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Gets the value of the allRows property.
isBinary() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Gets the value of the binary property.
isBinary() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Gets the value of the binary property.
isBinary() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
Gets the value of the binary property.
isCheckComplete() - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
isConcatenate() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Gets the value of the concatenate property.
isEdited() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Gets the value of the edited property.
isEmpty() - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
isExcludeFirstRow() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Gets the value of the excludeFirstRow property.
isExternalReference(String) - Static method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Checks if the given reference is a reference, which points outside the ODF package
isFile() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Gets the value of the file property.
isFile() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Gets the value of the file property.
isFolder() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
 
isForceCopy() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Gets the value of the forceCopy property.
isForceCopy() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Gets the value of the forceCopy property.
isIgnoreBlankRows() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Gets the value of the ignoreBlankRows property.
isIncludeStdErr() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the includeStdErr property.
isIncludeStdIn() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the includeStdIn property.
isIncludeStdOut() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Gets the value of the includeStdOut property.
isIsMethodConstructor() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the isMethodConstructor property.
isIsMethodStatic() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Gets the value of the isMethodStatic property.
isKeepSessionAlive() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Gets the value of the keepSessionAlive property.
isList() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Gets the value of the list property.
isMergedPort(ReceiverPort) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
isMethodConstructor - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
isMethodStatic - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
isRunFirst() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
Gets the value of the runFirst property.
isSendHTTPExpectRequestHeader() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the sendHTTPExpectRequestHeader property.
isShowRedirectionOutputPort() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Gets the value of the showRedirectionOutputPort property.
isStrict() - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
isStrict() - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
isTempFile() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Gets the value of the tempFile property.
isTempFile() - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Gets the value of the tempFile property.
isUsingSchema() - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
isValidating() - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
isValidating() - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
isValue() - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Required
Gets the value of the value property.
IterableComparator - Class in uk.org.taverna.scufl2.api.impl
A Comparator of Iterables of comparables.
IterableComparator() - Constructor for class uk.org.taverna.scufl2.api.impl.IterableComparator
 
iterateOverInputPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode
 
Iteration - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for Iteration complex type.
Iteration() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Iteration
 
iteration - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.IterationStrategyStack
 
IterationNode - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for IterationNode complex type.
IterationNode() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.IterationNode
 
IterationNodeParent - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for IterationNodeParent complex type.
IterationNodeParent() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.IterationNodeParent
 
iterationStrategies - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack
 
iterationstrategy - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
IterationStrategyNode - Interface in uk.org.taverna.scufl2.api.iterationstrategy
 
IterationStrategyParent - Interface in uk.org.taverna.scufl2.api.iterationstrategy
 
IterationStrategyStack - Class in uk.org.taverna.scufl2.api.iterationstrategy
 
IterationStrategyStack() - Constructor for class uk.org.taverna.scufl2.api.iterationstrategy.IterationStrategyStack
 
IterationStrategyStack(Processor) - Constructor for class uk.org.taverna.scufl2.api.iterationstrategy.IterationStrategyStack
 
IterationStrategyStack - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
IterationStrategyStack() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack
 
iterationStrategyStack - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
 
iterationStrategyStack - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.IterationStrategyStack
 
IterationStrategyStack - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for IterationStrategyStack complex type.
IterationStrategyStack() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.IterationStrategyStack
 
iterationStrategyStack - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
 
IterationStrategyStack.IterationStrategies - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
IterationStrategyStack.IterationStrategies() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack.IterationStrategies
 
IterationStrategyTopNode - Interface in uk.org.taverna.scufl2.api.iterationstrategy
 
IterationstrategyType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for iterationstrategyType complex type.
IterationstrategyType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
 
iterator() - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
iterator - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.CrossType
 
iterator - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DotType
 
iterator - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
 
IteratorType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for iteratorType complex type.
IteratorType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.IteratorType
 

J

j - Variable in class org.w3._2000._09.xmldsig.DSAKeyValueType
 
jarfile - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DependenciesType
 
JarfileType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for jarfileType complex type.
JarfileType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.JarfileType
 
javaClass - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
 
jaxbContext - Variable in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
jaxbContext - Variable in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
jaxbContext - Variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 

K

keepSessionAlive - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
 
keepSessionAlive - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
 
key - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MapType
 
KeyDerivation - Class in uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest
 
KeyDerivation() - Constructor for class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
 
KeyDerivation(String, String, int) - Constructor for class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
 
keyInfo - Variable in class org.w3._2000._09.xmldsig.SignatureType
 
keyInfo - Variable in class org.w3._2001._04.xmlenc.EncryptedType
 
KeyInfoType - Class in org.w3._2000._09.xmldsig
Java class for KeyInfoType complex type.
KeyInfoType() - Constructor for class org.w3._2000._09.xmldsig.KeyInfoType
 
KeyValueType - Class in org.w3._2000._09.xmldsig
Java class for KeyValueType complex type.
KeyValueType() - Constructor for class org.w3._2000._09.xmldsig.KeyValueType
 
knownClone(T, T) - Method in class uk.org.taverna.scufl2.api.common.AbstractCloneable.Cloning
 

L

last() - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
LazyMap<KeyType,ValueType> - Class in uk.org.taverna.scufl2.api.impl
A lazy TreeMap, inspired by org.apache.commons.collections.map.LazyMap
LazyMap() - Constructor for class uk.org.taverna.scufl2.api.impl.LazyMap
 
LazyMap(Comparator<? super KeyType>) - Constructor for class uk.org.taverna.scufl2.api.impl.LazyMap
 
LazyMap(Map<? extends KeyType, ? extends ValueType>) - Constructor for class uk.org.taverna.scufl2.api.impl.LazyMap
 
LazyMap(SortedMap<KeyType, ? extends ValueType>) - Constructor for class uk.org.taverna.scufl2.api.impl.LazyMap
 
link - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
 
Link - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
One end of the links in the Datalink.
Link() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Link
 
LinkType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for linkType complex type.
LinkType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
 
LinkType - Enum in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for LinkType.
list - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.HTTPHeaders
 
list - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
 
list - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathNamespaceMap
 
listAllResources() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
listResources() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
listResources(String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
listResources(String, boolean) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
loadPackage(String) - Static method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Loads an OdfPackage from the given filePath.
loadPackage(File) - Static method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Loads an OdfPackage from the OpenDocument provided by a File.
loadPackage(InputStream) - Static method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Creates an OdfPackage from the OpenDocument provided by a InputStream.
LOCAL_WORKER_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BeanshellActivityParser
 
localDependencies - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
localDependencies - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
 
LocalDependencies - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for LocalDependencies complex type.
LocalDependencies() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.LocalDependencies
 
LocalExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
LocalExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.LocalExtensionParser
 
LocalType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for localType complex type.
LocalType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
 
localworkerName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
 
location - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig.MartService
 
log - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
log - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
 
LoopConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Configuration of the loop layer, which can call an activity again on a given condition.
LoopConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
 
LoopParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
 
LoopParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.LoopParser
 
LoopParser.ConditionalActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
Expose some of the useful activity/config parser methods to LoopParser with a different parser state.
LoopParser.ConditionalActivityParser(ParserState) - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.LoopParser.ConditionalActivityParser
 
lsid - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
 

M

mainProfile - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
 
mainWorkflow - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
 
makeProfile(Profile, URI) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
makeProfile(Workflow) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
makeUCFPackage(WorkflowBundle) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
makeWorkflow(Workflow, URI) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
makeWorkflowBundleElem() - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
ManifestType - Class in org.w3._2000._09.xmldsig
Java class for ManifestType complex type.
ManifestType() - Constructor for class org.w3._2000._09.xmldsig.ManifestType
 
Map - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
0 or more mappings.
Map() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Map
 
map - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Map
 
mapBean(String, WorkflowBean) - Method in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
mapBean(URI, WorkflowBean) - Method in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
Mapping - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
A mapping of port names.
Mapping() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Mapping
 
MAPPING_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SpreadsheetActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.ApiConsomerActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BeanshellActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomartActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomobyActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.DataflowActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.RshellActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SoaplabActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SpreadsheetActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.StringConstantActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLXMLSplitterParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ErrorBounceParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.FailoverParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.InvokeParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.LoopParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ParallelizeParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.XPathActivityParser
 
mapT2flowRavenIdToScufl2URI(URI) - Method in interface uk.org.taverna.scufl2.translator.t2flow.T2Parser
 
MapType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for mapType complex type.
MapType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.MapType
 
martDataset - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
 
martService - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
 
MAX_DELAY - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser.Defaults
 
MAX_RETRIES - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser.Defaults
 
maxDelay - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
 
maxinterval - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
 
maxJobs - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ParallelizeParser.Defaults
 
maxJobs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ParallelizeConfig
 
maxretries - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
 
maxretries - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
 
maxRetries - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
 
mechanismName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
 
mechanismName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
 
mechanismType - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
 
mechanismType - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
 
mechanismXML - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
 
mechanismXML - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
 
mediaType - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.RootFile
 
MEDIATYPES_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.AbstractActivityParser
 
mergemode - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
MergemodeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for mergemodeType complex type.
MergemodeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.MergemodeType
 
mergePosition - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
 
metadata - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SinkType
 
metadata - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SourceType
 
MetadataType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for metadataType complex type.
MetadataType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.MetadataType
 
method - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
 
methodName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
MethodType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for methodType complex type.
MethodType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
 
mime - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
 
mime - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
 
MIME_BINARY - Static variable in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
MIME_DATA_BUNDLE - Static variable in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
MIME_EPUB - Static variable in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
MIME_RDF - Static variable in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
MIME_SERVICE_BUNDLE - Static variable in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
MIME_TEXT_PLAIN - Static variable in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
MIME_TEXT_XML - Static variable in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
MIME_WORKFLOW_BUNDLE - Static variable in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
MIME_WORKFLOW_RUN_BUNDLE - Static variable in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
mimeType - Variable in class org.w3._2000._09.xmldsig.ObjectType
 
mimeType - Variable in class org.w3._2001._04.xmlenc.EncryptedType
 
mimeType - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MimeTypes
 
MimeType - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for MimeType complex type.
MimeType() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.MimeType
 
mimeTypes - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MetadataType
 
MimeTypes - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for anonymous complex type.
MimeTypes() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.MimeTypes
 
MimeTypeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for mimeTypeType complex type.
MimeTypeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.MimeTypeType
 
mismatchConfigurableType(Configuration, Configurable) - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
mismatchConfigurableType(Configuration, Configurable) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
mismatchConfigurableType(Configuration, Configurable) - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
mismatchConfigurableType(Configuration, Configurable) - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
MismatchConfigurableTypeProblem - Class in uk.org.taverna.scufl2.validation.correctness.report
 
MismatchConfigurableTypeProblem(Configuration, Configurable) - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.MismatchConfigurableTypeProblem
 
missingIterationStrategyStack(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
missingIterationStrategyStack(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
missingIterationStrategyStack(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
missingIterationStrategyStack(Processor) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
MissingIterationStrategyStackProblem - Class in uk.org.taverna.scufl2.validation.structural.report
 
MissingIterationStrategyStackProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.structural.report.MissingIterationStrategyStackProblem
 
MissingMainIncomingDataLinkProblem - Class in uk.org.taverna.scufl2.validation.structural.report
 
MissingMainIncomingDataLinkProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.structural.report.MissingMainIncomingDataLinkProblem
 
missingMainIncomingLink(ReceiverPort) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
missingMainIncomingLink(ReceiverPort) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
missingMainIncomingLink(ReceiverPort) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
missingMainIncomingLink(ReceiverPort) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
mobyEndpoint - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
 
mobyEndpoint - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
 
mobyEndpoint - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
 
MobyEndpointType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for mobyEndpointType complex type.
MobyEndpointType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.MobyEndpointType
 
mobyObjectScufl2Uri - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomobyActivityParser
 
mobyServiceScufl2Uri - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomobyActivityParser
 
mode - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MergemodeType
 
mode - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SinkType
 
modification - Variable in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification.HasChange
 
modulus - Variable in class org.w3._2000._09.xmldsig.RSAKeyValueType
 

N

name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputActivityPort
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputProcessorPort
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputWorkflowPort
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputWorkflowPort
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
 
name - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
 
NAME - Static variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameter
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
 
NAME - Static variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyParameter
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ClassType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.CoordinationType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DefaultType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.IteratorType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SinkType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SourceType
 
name - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplatePortReferenceType
 
name - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
 
name - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Port
 
name - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.PortProduct
 
name - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
 
name - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Property
 
name - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
 
Named - Interface in uk.org.taverna.scufl2.api.common
A named WorkflowBean.
namedMap - Variable in class uk.org.taverna.scufl2.api.common.NamedSet
 
NamedSet<T extends Named> - Class in uk.org.taverna.scufl2.api.common
NamedSet() - Constructor for class uk.org.taverna.scufl2.api.common.NamedSet
Constructs an empty NamedSet.
NamedSet(Collection<? extends T>) - Constructor for class uk.org.taverna.scufl2.api.common.NamedSet
Constructs a NamedSet containing all the elements of the given collection.
nameIterator() - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
NAMESPACE_MAPPING_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.t23activities.XPathActivityParser
 
NamespacePrefixMapperJAXB_RI - Class in uk.org.taverna.scufl2.rdfxml.impl
 
NamespacePrefixMapperJAXB_RI() - Constructor for class uk.org.taverna.scufl2.rdfxml.impl.NamespacePrefixMapperJAXB_RI
 
negativeValue(WorkflowBean, String, Integer) - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
negativeValue(WorkflowBean, String, Integer) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
negativeValue(WorkflowBean, String, Integer) - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
negativeValue(WorkflowBean, String, Integer) - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
NegativeValueProblem - Class in uk.org.taverna.scufl2.validation.correctness.report
 
NegativeValueProblem(WorkflowBean, String, Integer) - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.NegativeValueProblem
 
NESTED_WORKFLOW - Static variable in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
nestedUri - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.DataflowActivityParser
 
nestedWorkflowForProcessor(Processor, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
Return nested workflow for processor as configured in given profile.
nestedWorkflowsForProcessor(Processor, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
Return list of nested workflows for processor as configured in given profile.
netSfTavernaRavenRepositoryBasicArtifact - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ArtifactDependencies
 
netSfTavernaT2ActivitiesRshellRShellPortSymanticTypeBean - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType
 
netSfTavernaT2AnnotationAnnotationAssertionImpl - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl
 
netSfTavernaT2AnnotationAnnotationChainImpl - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
 
netSfTavernaT2WorkflowmodelProcessorActivityConfigActivityInputPortDefinitionBean - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputPorts
 
netSfTavernaT2WorkflowmodelProcessorActivityConfigActivityOutputPortDefinitionBean - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityOutputPorts
 
newRevision() - Method in interface uk.org.taverna.scufl2.api.annotation.Revisioned
Make a new Revision to mark structural changes to this workflow bean.
newRevision(URI) - Method in interface uk.org.taverna.scufl2.api.annotation.Revisioned
Make a new Revision to mark structural changes to this workflow bean with the given identifier.
newRevision() - Method in class uk.org.taverna.scufl2.api.common.AbstractRevisioned
 
newRevision(URI) - Method in class uk.org.taverna.scufl2.api.common.AbstractRevisioned
 
newRVersion - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
 
newXMLReader(OdfPackage) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
create an XMLReader with a Resolver set to parse content in a ODF Package
NodeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for nodeType complex type.
NodeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.NodeType
 
nonAbsoluteURI(WorkflowBean, String, URI) - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
nonAbsoluteURI(WorkflowBean, String, URI) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
nonAbsoluteURI(WorkflowBean, String, URI) - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
nonAbsoluteURI(WorkflowBean, String, URI) - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
NonAbsoluteURIProblem - Class in uk.org.taverna.scufl2.validation.correctness.report
 
NonAbsoluteURIProblem(WorkflowBean, String, URI) - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.NonAbsoluteURIProblem
 
NotificationType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for notificationType complex type.
NotificationType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.NotificationType
 
nullCompare(Object, Object) - Static method in class uk.org.taverna.scufl2.api.impl.NullSafeComparator
Compare two objects for nullity only.
nullField(WorkflowBean, String) - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
nullField(WorkflowBean, String) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
nullField(WorkflowBean, String) - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
nullField(WorkflowBean, String) - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
NullFieldProblem - Class in uk.org.taverna.scufl2.validation.correctness.report
 
NullFieldProblem(WorkflowBean, String) - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.NullFieldProblem
 
NullSafeComparator<T extends Comparable<T>> - Class in uk.org.taverna.scufl2.api.impl
A Comparator that is null-safe
NullSafeComparator() - Constructor for class uk.org.taverna.scufl2.api.impl.NullSafeComparator
 

O

OA - Static variable in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
object - Variable in class org.w3._2000._09.xmldsig.SignatureType
 
ObjectFactory - Class in org.oasis_open.names.tc.opendocument.xmlns.container
This object contains factory methods for each Java content interface and Java element interface generated in the org.oasis_open.names.tc.opendocument.xmlns.container package.
ObjectFactory() - Constructor for class org.oasis_open.names.tc.opendocument.xmlns.container.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.oasis_open.names.tc.opendocument.xmlns.container
ObjectFactory - Class in org.purl.wf4ever.roevo.jaxb
This object contains factory methods for each Java content interface and Java element interface generated in the org.purl.wf4ever.roevo.jaxb package.
ObjectFactory() - Constructor for class org.purl.wf4ever.roevo.jaxb.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.purl.wf4ever.roevo.jaxb
ObjectFactory - Class in org.w3._1999._02._22_rdf_syntax_ns
This object contains factory methods for each Java content interface and Java element interface generated in the org.w3._1999._02._22_rdf_syntax_ns package.
ObjectFactory() - Constructor for class org.w3._1999._02._22_rdf_syntax_ns.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.w3._1999._02._22_rdf_syntax_ns
ObjectFactory - Class in org.w3._2000._01.rdf_schema
This object contains factory methods for each Java content interface and Java element interface generated in the org.w3._2000._01.rdf_schema package.
ObjectFactory() - Constructor for class org.w3._2000._01.rdf_schema.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.w3._2000._01.rdf_schema
ObjectFactory - Class in org.w3._2000._09.xmldsig
This object contains factory methods for each Java content interface and Java element interface generated in the org.w3._2000._09.xmldsig package.
ObjectFactory() - Constructor for class org.w3._2000._09.xmldsig.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.w3._2000._09.xmldsig
ObjectFactory - Class in org.w3._2001._04.xmlenc
This object contains factory methods for each Java content interface and Java element interface generated in the org.w3._2001._04.xmlenc package.
ObjectFactory() - Constructor for class org.w3._2001._04.xmlenc.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.w3._2001._04.xmlenc
ObjectFactory - Class in org.w3.prov.jaxb
This object contains factory methods for each Java content interface and Java element interface generated in the org.w3.prov.jaxb package.
ObjectFactory() - Constructor for class org.w3.prov.jaxb.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.w3.prov.jaxb
ObjectFactory - Class in uk.org.taverna.scufl2.rdfxml.jaxb
This object contains factory methods for each Java content interface and Java element interface generated in the uk.org.taverna.scufl2.rdfxml.jaxb package.
ObjectFactory() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: uk.org.taverna.scufl2.rdfxml.jaxb
ObjectFactory - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
This object contains factory methods for each Java content interface and Java element interface generated in the uk.org.taverna.scufl2.xml.scufl.jaxb package.
ObjectFactory() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: uk.org.taverna.scufl2.xml.scufl.jaxb
ObjectFactory - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
This object contains factory methods for each Java content interface and Java element interface generated in the uk.org.taverna.scufl2.xml.t2flow.jaxb package.
ObjectFactory() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: uk.org.taverna.scufl2.xml.t2flow.jaxb
ObjectType - Class in org.w3._2000._09.xmldsig
Java class for ObjectType complex type.
ObjectType() - Constructor for class org.w3._2000._09.xmldsig.ObjectType
 
OdfFileEntry - Class in uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest
 
OdfFileEntry() - Constructor for class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
 
OdfFileEntry(String, String) - Constructor for class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
 
OdfFileEntry(String, String, int) - Constructor for class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
 
OdfPackage - Class in uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg
OdfPackage represents the package view to an OpenDocument document.
OdfPackage.OdfFile - Enum in uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg
 
OdfXMLHelper - Class in uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg
 
OdfXMLHelper() - Constructor for class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
 
open(File) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
open(InputStream) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
OPERATION - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLActivityParser
 
operation - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
 
operation - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
 
OperationType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for operationType complex type.
OperationType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.OperationType
 
optional - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
 
optional - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
 
optional - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
 
Optional - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for Optional complex type.
Optional() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Optional
 
org.oasis_open.names.tc.opendocument.xmlns.container - package org.oasis_open.names.tc.opendocument.xmlns.container
 
org.purl.wf4ever.roevo.jaxb - package org.purl.wf4ever.roevo.jaxb
 
org.w3._1999._02._22_rdf_syntax_ns - package org.w3._1999._02._22_rdf_syntax_ns
 
org.w3._2000._01.rdf_schema - package org.w3._2000._01.rdf_schema
 
org.w3._2000._09.xmldsig - package org.w3._2000._09.xmldsig
 
org.w3._2001._04.xmlenc - package org.w3._2001._04.xmlenc
 
org.w3.prov.jaxb - package org.w3.prov.jaxb
 
OriginalConfigBean - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
A serialised configuration bean to configure a dispatch layer or activity.
OriginalConfigBean() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
 
otherHTTPHeaders - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
outgoingDataFormat - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
outOfScopeValue(WorkflowBean, String, Object) - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
outOfScopeValue(WorkflowBean, String, Object) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
outOfScopeValue(WorkflowBean, String, Object) - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
outOfScopeValue(WorkflowBean, String, Object) - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
OutOfScopeValueProblem - Class in uk.org.taverna.scufl2.validation.correctness.report
 
OutOfScopeValueProblem(WorkflowBean, String, Object) - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.OutOfScopeValueProblem
 
output - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
 
OutputActivityPort - Class in uk.org.taverna.scufl2.api.port
An OutputActivityPort is a that outputs data from an Activity.
OutputActivityPort() - Constructor for class uk.org.taverna.scufl2.api.port.OutputActivityPort
Constructs an OutputActivityPort with a random UUID as the name.
OutputActivityPort(Activity, String) - Constructor for class uk.org.taverna.scufl2.api.port.OutputActivityPort
Constructs an OutputPort for the specified Activity with the specified name.
outputActivityPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
 
outputActivityPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity.OutputActivityPort
 
OutputActivityPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
OutputActivityPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
 
OutputFormat - Enum in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for OutputFormat.
outputFormat - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
outputmap - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.AlternateType
 
outputMap - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
 
OutputPort - Interface in uk.org.taverna.scufl2.api.port
A Port that specifies outputs from a Workflow component.
outputPort - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.OutputPortListType
 
OutputPortBinding - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for OutputPortBinding complex type.
OutputPortBinding() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.OutputPortBinding
 
outputPortBinding - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
 
outputPortBinding - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.OutputPortBinding
 
OutputPortListType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for outputPortListType complex type.
OutputPortListType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.OutputPortListType
 
outputPorts - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
 
outputPorts - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
 
OutputPortType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for outputPortType complex type.
OutputPortType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.OutputPortType
 
OutputProcessorPort - Class in uk.org.taverna.scufl2.api.port
An OutputProcessorPort is a that outputs data from a Processor.
OutputProcessorPort() - Constructor for class uk.org.taverna.scufl2.api.port.OutputProcessorPort
Constructs an OutputProcessorPort with a random UUID as the name.
OutputProcessorPort(Processor, String) - Constructor for class uk.org.taverna.scufl2.api.port.OutputProcessorPort
Constructs an OutputProcessorPort for the specified Processor with the specified name.
OutputProcessorPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
OutputProcessorPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
 
outputProcessorPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
 
outputProcessorPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.OutputProcessorPort
 
outputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
outputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
 
outputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
 
outputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
outputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
 
outputSymanticTypes - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
 
OutputWorkflowPort - Class in uk.org.taverna.scufl2.api.port
An OutputWorkflowPort is a that outputs data from a Workflow.
OutputWorkflowPort() - Constructor for class uk.org.taverna.scufl2.api.port.OutputWorkflowPort
Constructs an OutputWorkflowPort with a random UUID as the name.
OutputWorkflowPort(Workflow, String) - Constructor for class uk.org.taverna.scufl2.api.port.OutputWorkflowPort
Constructs an OutputWorkflowPort for the specified Workflow with the specified name.
OutputWorkflowPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
OutputWorkflowPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.OutputWorkflowPort
 
outputWorkflowPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
 
outputWorkflowPort - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.OutputWorkflowPort
 

P

p - Variable in class org.w3._2000._09.xmldsig.DSAKeyValueType
 
ParallelizeConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Defines maximum number of jobs to run concurrently.
ParallelizeConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ParallelizeConfig
 
ParallelizeParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
 
ParallelizeParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ParallelizeParser
 
ParallelizeParser.Defaults - Class in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
 
ParallelizeParser.Defaults() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ParallelizeParser.Defaults
 
parameter - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
 
parameter - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
 
parameterDimensions - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
parameterNames - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
parameterTypes - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
parse(InputStream) - Method in class uk.org.taverna.scufl2.api.io.structure.StructureReader
 
parse(OdfPackage, String, ContentHandler, ErrorHandler) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
use SAX parser to parse content of package
parseActivity(Activity) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
parseActivity(Activity) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.LoopParser.ConditionalActivityParser
 
parseActivity(Activity) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseActivityAndAddToProfile(Activity) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseActivityBinding(Activity, int) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseActivityInputMap(Map) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseActivityOutputMap(Map) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseAndAddInputPortDefinition(ActivityPortDefinitionBean, Configuration, Activity) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.AbstractActivityParser
 
parseAndAddOutputPortDefinition(ActivityPortDefinitionBean, Configuration, Activity) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.AbstractActivityParser
 
parseAnnotations(WorkflowBean, Annotations) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseConfiguration(Configuration) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.ApiConsomerActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BeanshellActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomartActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.BiomobyActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.DataflowActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.RshellActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SoaplabActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SpreadsheetActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.StringConstantActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLXMLSplitterParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ErrorBounceParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.FailoverParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.InvokeParser
 
parseConfiguration(ConfigBean) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.LoopParser.ConditionalActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.LoopParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ParallelizeParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.XPathActivityParser
 
parseConfiguration(ConfigBean) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseConfiguration(T2FlowParser, ConfigBean, ParserState) - Method in interface uk.org.taverna.scufl2.translator.t2flow.T2Parser
 
parseConfigurationAndAddToProfile(ConfigBean, T2FlowParser.Configures) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseContainerXML() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
parseControlLink(Blocking) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseCrossDotOrPortNodeList(List<Object>) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseCrossProduct(CrossProduct) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseDataflow(Dataflow, Workflow) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseDataLink(DataLink) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseDatalinks(Datalinks) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseDispatchStack(DispatchStack) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseDispatchStack(DispatchStack) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseDispatchStack(DispatchLayer) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseDispatchStackLayer(DispatchStackLayer) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseDotProduct(DotProduct) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseIdentificationAnnotations(Annotations) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseInputActivityPort(InputActivityPort) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
parseInputPortBinding(InputPortBinding) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
parseInputPorts(AnnotatedGranularDepthPorts) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseInputWorkflowPort(InputWorkflowPort) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseIterationStrategyNode(IterationNode) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseIterationStrategyStack(IterationStrategyStack) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseIterationStrategyStack(IterationStrategyStack) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseJson(String) - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
 
parseLine(String) - Method in class uk.org.taverna.scufl2.api.io.structure.StructureReader
 
parseOutputActivityPort(OutputActivityPort) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
parseOutputPortBinding(OutputPortBinding) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
parseOutputPorts(AnnotatedPorts) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseOutputWorkflowPort(OutputWorkflowPort) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parsePortNode(PortNode) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseProcessor(Processor) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseProcessorBinding(ProcessorBinding) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
parseProcessorInputPorts(Processor, DepthPorts) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseProcessorOutputPorts(Processor, GranularDepthPorts) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseProcessors(Processors) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseProductOf(ProductOf) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseProfile(Profile, URI) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
parseProfileSecond(Profile) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
parserState - Variable in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
ParserState - Class in uk.org.taverna.scufl2.rdfxml
 
ParserState() - Constructor for class uk.org.taverna.scufl2.rdfxml.ParserState
 
ParserState - Class in uk.org.taverna.scufl2.translator.scufl
 
ParserState() - Constructor for class uk.org.taverna.scufl2.translator.scufl.ParserState
 
parserState - Variable in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
ParserState - Class in uk.org.taverna.scufl2.translator.t2flow
 
ParserState() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
parserState - Variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseScufl(File) - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
parseScufl(InputStream) - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
parseScufl(ScuflType) - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
parseScuflObject(Object) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.AbstractProcessorExtensionParser
 
parseScuflObject(Object) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.ApiConsumerExtensionParser
 
parseScuflObject(Object) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.BeanshellExtensionParser
 
parseScuflObject(Object) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.BiomartExtensionParser
 
parseScuflObject(Object) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.BiomobyExtensionParser
 
parseScuflObject(Object) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.LocalExtensionParser
 
parseScuflObject(Object) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.RshellExtensionParser
 
parseScuflObject(Object) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.SoaplabExtensionParser
 
parseScuflObject(Object) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.StringConstantExtensionParser
 
parseScuflObject(Object) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.WsdlExtensionParser
 
parseScuflObject(Object) - Method in interface uk.org.taverna.scufl2.translator.scufl.ScuflExtensionParser
 
parseT2Flow(File) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseT2Flow(InputStream) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseT2Flow(Workflow) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
parseToolDescription(ObjectNode, UsecaseDescription, ParserState) - Method in class uk.org.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
 
parseType - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack.DispatchStackLayers
 
parseType - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack.IterationStrategies
 
parseType - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProductOf
 
parseWorkflow(Workflow, URI) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
parseWorkflowBundle(WorkflowBundle, URI) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowBundleParser
 
passedProcessor(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
passedProcessor(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
passedProcessor(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
passedProcessor(Processor) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
password - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
 
password - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
 
path - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
 
PAV - Static variable in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
peek() - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
pgenCounter - Variable in class org.w3._2000._09.xmldsig.DSAKeyValueType
 
PGPDataType - Class in org.w3._2000._09.xmldsig
Java class for PGPDataType complex type.
PGPDataType() - Constructor for class org.w3._2000._09.xmldsig.PGPDataType
 
pollingBackoff - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
 
pollingInterval - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
 
pollingIntervalMax - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
 
pop() - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
Port - Interface in uk.org.taverna.scufl2.api.port
A Port specifies the data consumed or produced by a Workflow component.
port - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.InfernoType
 
port - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
 
port - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedGranularDepthPorts
 
port - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedPorts
 
port - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DepthPorts
 
port - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPorts
 
port - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Link
 
Port - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for Port complex type.
Port() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Port
 
port - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Ports
 
port - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
 
PORT_DEFINITION - Static variable in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
PORT_DEFINITION - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.AbstractActivityParser
Deprecated.
portDefinitionFor(ActivityPort, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
portDepth - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputActivityPort
 
portDepth - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputProcessorPort
 
portDepth - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.InputWorkflowPort
 
portDepth - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
 
portDepth - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
 
PortDepth - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
PortDepth() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.PortDepth
 
Ported - Interface in uk.org.taverna.scufl2.api.common
A WorkflowBean that has InputPorts and OutputPorts.
portMentionedTwice(IterationStrategyNode, IterationStrategyNode) - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
portMentionedTwice(IterationStrategyNode, IterationStrategyNode) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
portMentionedTwice(IterationStrategyNode, IterationStrategyNode) - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
portMentionedTwice(IterationStrategyNode, IterationStrategyNode) - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
PortMentionedTwiceProblem - Class in uk.org.taverna.scufl2.validation.correctness.report
 
PortMentionedTwiceProblem(IterationStrategyNode, IterationStrategyNode) - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.PortMentionedTwiceProblem
 
portMissingFromIterationStrategyStack(Port, IterationStrategyStack) - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
portMissingFromIterationStrategyStack(Port, IterationStrategyStack) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
portMissingFromIterationStrategyStack(Port, IterationStrategyStack) - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
portMissingFromIterationStrategyStack(Port, IterationStrategyStack) - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
PortMissingFromIterationStrategyStackProblem - Class in uk.org.taverna.scufl2.validation.correctness.report
 
PortMissingFromIterationStrategyStackProblem(Port, IterationStrategyStack) - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.PortMissingFromIterationStrategyStackProblem
 
PortNode - Class in uk.org.taverna.scufl2.api.iterationstrategy
 
PortNode() - Constructor for class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
PortNode(IterationStrategyParent, InputProcessorPort) - Constructor for class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
PortNode - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
PortNode() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode
 
PortNode.DesiredDepth - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
PortNode.DesiredDepth() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode.DesiredDepth
 
PortProduct - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for PortProduct complex type.
PortProduct() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.PortProduct
 
Ports - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of ports.
Ports() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Ports
 
PortType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for portType complex type.
PortType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.PortType
 
possibleDownStreamProcessors(Workflow, Processor) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
Find processors that a given processor can connect to downstream.
possibleUpStreamProcessors(Workflow, Processor) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
Find processors that a given processor can connect to upstream.
prepareAndSave(File) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
prepareContainerXML() - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
preparingTimeoutInSeconds - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
preserveOriginal(WorkflowBundle, InputStream) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
Processor - Class in uk.org.taverna.scufl2.api.core
A Processor is a Workflow component that controls the invocation of activities.
Processor() - Constructor for class uk.org.taverna.scufl2.api.core.Processor
Constructs a Processor with a random UUID as the name and no parent Workflow.
Processor(Workflow, String) - Constructor for class uk.org.taverna.scufl2.api.core.Processor
Constructs a Processor with the specified parent Workflow and name.
Processor - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Processor() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
 
processor - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
 
processor - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.Processor
 
processor - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
 
processor - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Link
 
Processor - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
A processor of a dataflow.
Processor() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
 
processor - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processors
 
Processor.DispatchStack - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Processor.DispatchStack() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.DispatchStack
 
Processor.InputProcessorPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Processor.InputProcessorPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.InputProcessorPort
 
Processor.IterationStrategyStack - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Processor.IterationStrategyStack() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.IterationStrategyStack
 
Processor.OutputProcessorPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Processor.OutputProcessorPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.OutputProcessorPort
 
ProcessorBinding - Class in uk.org.taverna.scufl2.api.profiles
A ProcessorBinding specifies that when enacting a Workflow, if this particular ProcessorBinding is used, then the boundActivity will be used to implement the boundProcessor.
ProcessorBinding() - Constructor for class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
 
ProcessorBinding - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
ProcessorBinding() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
 
processorBinding - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
 
ProcessorBinding.ActivityPosition - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
ProcessorBinding.ActivityPosition() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.ActivityPosition
 
ProcessorBinding.InputPortBinding - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
ProcessorBinding.InputPortBinding() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.InputPortBinding
 
ProcessorBinding.OutputPortBinding - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
ProcessorBinding.OutputPortBinding() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.OutputPortBinding
 
processorBindingForProcessor(Processor, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
processorBindingsForProcessor(Processor, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
processorBindingsToActivity(Activity) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
processorElement - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
ProcessorInputPortBinding - Class in uk.org.taverna.scufl2.api.profiles
A ProcessorInputPortBinding specifies the InputActivityPort to which data passed into an InputProcessorPort is sent.
ProcessorInputPortBinding() - Constructor for class uk.org.taverna.scufl2.api.profiles.ProcessorInputPortBinding
Constructs a ProcessorInputPortBinding with no binding set.
ProcessorInputPortBinding(ProcessorBinding, InputProcessorPort, InputActivityPort) - Constructor for class uk.org.taverna.scufl2.api.profiles.ProcessorInputPortBinding
Constructs a ProcessorInputPortBinding for the specified ProcessorBinding.
processorInputProcessorPort(InputProcessorPort) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
ProcessorOutputPortBinding - Class in uk.org.taverna.scufl2.api.profiles
A ProcessorOutputPortBinding specifies the OutputActivityPort from which data is received for an OutputProcessorPort.
ProcessorOutputPortBinding() - Constructor for class uk.org.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
Constructs a ProcessorOutputPortBinding with no binding set.
ProcessorOutputPortBinding(ProcessorBinding, OutputActivityPort, OutputProcessorPort) - Constructor for class uk.org.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
Constructs a ProcessorOutputPortBinding for the specified ProcessorBinding.
processorOutputProcessorPort(OutputProcessorPort) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
ProcessorPort - Interface in uk.org.taverna.scufl2.api.port
A Port that specifies the data consumed or produced by an Processor.
ProcessorPortBinding<A extends ActivityPort,P extends ProcessorPort> - Class in uk.org.taverna.scufl2.api.profiles
The binding between an ActivityPort and a ProcessorPort.
ProcessorPortBinding() - Constructor for class uk.org.taverna.scufl2.api.profiles.ProcessorPortBinding
 
processorPortBindingForPort(InputPort, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
processorPortBindingForPort(OutputPort, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
processorPortBindingForPortInternal(Port, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
processorPortBindingInternalInBinding(Port, ProcessorBinding) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
processors - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
 
Processors - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
List of processors.
Processors() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processors
 
ProcessorType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for processorType complex type.
ProcessorType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
producedBy - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Workflow
 
productOf - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.CrossProduct
 
productOf - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DotProduct
 
ProductOf - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
ProductOf() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.ProductOf
 
Profile - Class in uk.org.taverna.scufl2.api.profiles
A Profile specifies a set of compatible ProcessorBindings.
Profile() - Constructor for class uk.org.taverna.scufl2.api.profiles.Profile
Constructs a Profile with a random UUID as the name.
Profile(String) - Constructor for class uk.org.taverna.scufl2.api.profiles.Profile
Constructs a Profile with the specified name.
Profile - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Profile() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
 
profile - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
 
profile - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle.Profile
 
PROFILE - Static variable in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
PROFILE_ROOT - Static variable in class uk.org.taverna.scufl2.api.profiles.Profile
 
profileDoc(OutputStream, Profile, URI) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
ProfileDocument - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for ProfileDocument complex type.
ProfileDocument() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.ProfileDocument
 
ProfileParser - Class in uk.org.taverna.scufl2.rdfxml
 
ProfileParser() - Constructor for class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
ProfileParser(ThreadLocal<ParserState>) - Constructor for class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
properties - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
 
Properties - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for Properties complex type.
Properties() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Properties
 
property - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Properties
 
Property - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for Property complex type.
Property() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Property
 
PROV - Static variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
push(WorkflowBean) - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 

Q

q - Variable in class org.w3._2000._09.xmldsig.DSAKeyValueType
 
qname - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
 
qname - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
 
qname - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
 
query - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
 
queueDeny - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
queuePreferred - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 

R

Range - Class in org.w3._2000._01.rdf_schema
Java class for anonymous complex type.
Range() - Constructor for class org.w3._2000._01.rdf_schema.Range
 
RANGE_URI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SpreadsheetActivityParser
 
raven - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
 
raven - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
 
Raven - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Raven artifact described using typical Maven groupId, artifactId and version.
Raven() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Raven
 
ravenURI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
RDF - Class in org.w3._1999._02._22_rdf_syntax_ns
Java class for RDF complex type.
RDF() - Constructor for class org.w3._1999._02._22_rdf_syntax_ns.RDF
 
RDF - Static variable in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
RDFXMLReader - Class in uk.org.taverna.scufl2.rdfxml
 
RDFXMLReader() - Constructor for class uk.org.taverna.scufl2.rdfxml.RDFXMLReader
 
RDFXMLSerializer - Class in uk.org.taverna.scufl2.rdfxml
 
RDFXMLSerializer() - Constructor for class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
RDFXMLSerializer(WorkflowBundle) - Constructor for class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
RDFXMLSerializer.ProfileSerialisationVisitor - Class in uk.org.taverna.scufl2.rdfxml
 
RDFXMLSerializer.ProfileSerialisationVisitor(ProfileDocument) - Constructor for class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer.ProfileSerialisationVisitor
 
RDFXMLSerializer.WorkflowSerialisationVisitor - Class in uk.org.taverna.scufl2.rdfxml
 
RDFXMLSerializer.WorkflowSerialisationVisitor(Workflow) - Constructor for class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer.WorkflowSerialisationVisitor
 
RDFXMLWriter - Class in uk.org.taverna.scufl2.rdfxml
 
RDFXMLWriter() - Constructor for class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
readBundle(File, String) - Method in class uk.org.taverna.scufl2.api.io.structure.StructureReader
 
readBundle(InputStream, String) - Method in class uk.org.taverna.scufl2.api.io.structure.StructureReader
 
readBundle(File, String) - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Reads a file containing a workflow bundle in the specified media type and returns a WorkflowBundle.
readBundle(InputStream, String) - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Reads a stream containing a workflow bundle in the specified media type and returns a WorkflowBundle.
readBundle(URL, String) - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Reads a URL containing a workflow bundle in the specified media type and returns a WorkflowBundle.
readBundle(File, String) - Method in interface uk.org.taverna.scufl2.api.io.WorkflowBundleReader
Read a file containing a workflow bundle in the specified media type and return a WorkflowBundle.
readBundle(InputStream, String) - Method in interface uk.org.taverna.scufl2.api.io.WorkflowBundleReader
Read a stream containing a workflow bundle in the specified media type and return a WorkflowBundle.
readBundle(File, String) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLReader
 
readBundle(InputStream, String) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLReader
 
readBundle(File, String) - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflReader
 
readBundle(InputStream, String) - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflReader
 
readBundle(File, String) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
readBundle(InputStream, String) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
ReaderException - Exception in uk.org.taverna.scufl2.api.io
Thrown when there is a problem reading a WorkflowBundle
ReaderException() - Constructor for exception uk.org.taverna.scufl2.api.io.ReaderException
Constructs an exception with no message or cause.
ReaderException(String) - Constructor for exception uk.org.taverna.scufl2.api.io.ReaderException
Constructs an exception with the specified message and no cause.
ReaderException(String, Throwable) - Constructor for exception uk.org.taverna.scufl2.api.io.ReaderException
Constructs an exception with the specified message and cause.
ReaderException(Throwable) - Constructor for exception uk.org.taverna.scufl2.api.io.ReaderException
Constructs an exception with the specified cause and and the same message as the cause (if the cause is not null).
readersLoader - Variable in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
 
readProfile(URI, URI) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
readProfile(URI, URI, InputStream) - Method in class uk.org.taverna.scufl2.rdfxml.ProfileParser
 
readRevisionChain(InputStream, URI) - Method in class uk.org.taverna.scufl2.rdfxml.RevisionParser
 
readWorkflow(URI, URI) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
readWorkflowBundle(UCFPackage, URI) - Method in class uk.org.taverna.scufl2.rdfxml.WorkflowBundleParser
 
receiveFrom - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
 
ReceiverPort - Interface in uk.org.taverna.scufl2.api.port
A Port that receives data from a DataLink in a Workflow.
recipient - Variable in class org.w3._2001._04.xmlenc.EncryptedKeyType
 
ref - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataflowConfig
 
reference - Variable in class org.w3._2000._09.xmldsig.ManifestType
 
reference - Variable in class org.w3._2000._09.xmldsig.SignedInfoType
 
reference - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
 
referenceList - Variable in class org.w3._2001._04.xmlenc.EncryptedKeyType
 
ReferenceList - Class in org.w3._2001._04.xmlenc
Java class for anonymous complex type.
ReferenceList() - Constructor for class org.w3._2001._04.xmlenc.ReferenceList
 
ReferenceType - Class in org.w3._2000._09.xmldsig
Java class for ReferenceType complex type.
ReferenceType() - Constructor for class org.w3._2000._09.xmldsig.ReferenceType
 
ReferenceType - Class in org.w3._2001._04.xmlenc
Java class for ReferenceType complex type.
ReferenceType() - Constructor for class org.w3._2001._04.xmlenc.ReferenceType
 
registryEndpoint - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
 
relatedResource - Variable in class org.purl.wf4ever.roevo.jaxb.Change
 
Relationship - Class in org.oasis_open.names.tc.opendocument.xmlns.container
Java class for Relationship complex type.
Relationship() - Constructor for class org.oasis_open.names.tc.opendocument.xmlns.container.Relationship
 
relationships - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
 
relativePath(URI, URI) - Method in class uk.org.taverna.scufl2.api.common.URITools
 
relativeUriForBean(WorkflowBean, WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.URITools
 
rememberDataLinkReceiver(DataLink) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
rememberDataLinkSender(DataLink) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
removal - Variable in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification.HasChange
 
remove(Object) - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
remove(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
 
removeByName(String) - Method in class uk.org.taverna.scufl2.api.common.NamedSet
Removes the element with the given name.
removePortsBindingForUnknownPorts(ProcessorBinding) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
removeResource(String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
ReportCorrectnessValidationListener - Class in uk.org.taverna.scufl2.validation.correctness.report
 
ReportCorrectnessValidationListener() - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
ReportCorrectnessValidationListener - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener() - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
ReportCorrectnessValidationListener.EmptyIterationStrategyTopNodeProblem - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener.EmptyIterationStrategyTopNodeProblem(IterationStrategyTopNode) - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.EmptyIterationStrategyTopNodeProblem
 
ReportCorrectnessValidationListener.IncompatibleGranularDepthProblem - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener.IncompatibleGranularDepthProblem(AbstractGranularDepthPort, Integer, Integer) - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.IncompatibleGranularDepthProblem
 
ReportCorrectnessValidationListener.MismatchConfigurableTypeProblem - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener.MismatchConfigurableTypeProblem(Configuration, Configurable) - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.MismatchConfigurableTypeProblem
 
ReportCorrectnessValidationListener.NegativeValueProblem - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener.NegativeValueProblem(WorkflowBean, String, Integer) - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NegativeValueProblem
 
ReportCorrectnessValidationListener.NonAbsoluteURIProblem - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener.NonAbsoluteURIProblem(WorkflowBean, String, URI) - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NonAbsoluteURIProblem
 
ReportCorrectnessValidationListener.NullFieldProblem - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener.NullFieldProblem(WorkflowBean, String) - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NullFieldProblem
 
ReportCorrectnessValidationListener.OutOfScopeValueProblem - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener.OutOfScopeValueProblem(WorkflowBean, String, Object) - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.OutOfScopeValueProblem
 
ReportCorrectnessValidationListener.PortMentionedTwiceProblem - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener.PortMentionedTwiceProblem(IterationStrategyNode, IterationStrategyNode) - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.PortMentionedTwiceProblem
 
ReportCorrectnessValidationListener.PortMissingFromIterationStrategyStackProblem - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener.PortMissingFromIterationStrategyStackProblem(Port, IterationStrategyStack) - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.PortMissingFromIterationStrategyStackProblem
 
ReportCorrectnessValidationListener.WrongParentProblem - Class in uk.org.taverna.scufl2.validation.correctness
 
ReportCorrectnessValidationListener.WrongParentProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.WrongParentProblem
 
ReportStructuralValidationListener - Class in uk.org.taverna.scufl2.validation.structural.report
 
ReportStructuralValidationListener() - Constructor for class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
ReportStructuralValidationListener - Class in uk.org.taverna.scufl2.validation.structural
 
ReportStructuralValidationListener() - Constructor for class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
repositories - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
 
repositories - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
 
RepositoriesType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for repositoriesType complex type.
RepositoriesType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.RepositoriesType
 
repository - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RepositoriesType
 
RepositoryType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for repositoryType complex type.
RepositoryType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.RepositoryType
 
repositoryUrl - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
 
repositoryUrl - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
 
Required - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Required() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Required
 
rEs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
resolve(String) - Method in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
resolveBeanUri(String, Class<T>) - Method in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
resolveBeanUri(URI) - Method in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
resolveUri(URI, WorkflowBundle) - Method in class uk.org.taverna.scufl2.api.common.URITools
 
Resource - Class in org.w3._1999._02._22_rdf_syntax_ns
Java class for Resource complex type.
Resource() - Constructor for class org.w3._1999._02._22_rdf_syntax_ns.Resource
 
resource - Variable in class org.w3._1999._02._22_rdf_syntax_ns.Resource
 
resource - Variable in class org.w3._1999._02._22_rdf_syntax_ns.Type
 
resource - Variable in class org.w3._2000._01.rdf_schema.Domain
 
resource - Variable in class org.w3._2000._01.rdf_schema.Range
 
resource - Variable in class org.w3._2000._01.rdf_schema.SeeAlso
 
resource - Variable in class org.w3._2000._01.rdf_schema.SubClassOf
 
resource - Variable in class org.w3._2000._01.rdf_schema.SubPropertyOf
 
resource - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ConfigurationType
 
RESTActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.t23activities
 
RESTActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
 
RESTConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for RESTConfig complex type.
RESTConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
RetrievalMethodType - Class in org.w3._2000._09.xmldsig
Java class for RetrievalMethodType complex type.
RetrievalMethodType() - Constructor for class org.w3._2000._09.xmldsig.RetrievalMethodType
 
retrybackoff - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
 
retrybackoff - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
 
RetryConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Defines parameters of retries for when an activity fails.
RetryConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
 
retrydelay - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
 
retrydelay - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
 
RetryParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
 
RetryParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser
 
RetryParser.Defaults - Class in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
Default values - ignored for now
RetryParser.Defaults() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser.Defaults
 
ReturnCodes - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ReturnCodes complex type.
ReturnCodes() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ReturnCodes
 
returnDimension - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
returnType - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
 
Revision - Class in uk.org.taverna.scufl2.api.annotation
A record of a revision.
Revision() - Constructor for class uk.org.taverna.scufl2.api.annotation.Revision
 
Revision(URI, Revision) - Constructor for class uk.org.taverna.scufl2.api.annotation.Revision
 
Revisioned - Interface in uk.org.taverna.scufl2.api.annotation
A WorkflowBean that is revisioned.
RevisionParser - Class in uk.org.taverna.scufl2.rdfxml
 
RevisionParser() - Constructor for class uk.org.taverna.scufl2.rdfxml.RevisionParser
 
RoEvoDocument - Class in org.purl.wf4ever.roevo.jaxb
Java class for RoEvoDocument complex type.
RoEvoDocument() - Constructor for class org.purl.wf4ever.roevo.jaxb.RoEvoDocument
 
role - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
 
Role - Enum in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for role.
Root - Interface in uk.org.taverna.scufl2.api.common
 
RootFile - Class in org.oasis_open.names.tc.opendocument.xmlns.container
Java class for RootFile complex type.
RootFile() - Constructor for class org.oasis_open.names.tc.opendocument.xmlns.container.RootFile
 
rootFilesOrAny - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
 
rowRange - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
RSAKeyValueType - Class in org.w3._2000._09.xmldsig
Java class for RSAKeyValueType complex type.
RSAKeyValueType() - Constructor for class org.w3._2000._09.xmldsig.RSAKeyValueType
 
RshellActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
RshellActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.RshellActivityParser
 
RShellConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for RShellConfig complex type.
RShellConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
 
RShellConnection - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for RShellConnection complex type.
RShellConnection() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
 
RshellExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
RshellExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.RshellExtensionParser
 
rshellInputPort - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortListType
 
RshellInputPortListType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for rshellInputPortListType complex type.
RshellInputPortListType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortListType
 
RshellInputPortType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for rshellInputPortType complex type.
RshellInputPortType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
 
rshellOutputPort - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortListType
 
RshellOutputPortListType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for rshellOutputPortListType complex type.
RshellOutputPortListType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortListType
 
RshellOutputPortType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for rshellOutputPortType complex type.
RshellOutputPortType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
 
RShellSymanticType - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for RShellSymanticType complex type.
RShellSymanticType() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType
 
RShellSymanticType.RShellPortSymanticTypeBean - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for anonymous complex type.
RShellSymanticType.RShellPortSymanticTypeBean() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
 
RShellSymanticType.RShellPortSymanticTypeBean.SymanticType - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for anonymous complex type.
RShellSymanticType.RShellPortSymanticTypeBean.SymanticType() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
 
RshellType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for rshellType complex type.
RshellType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
 
runFirst - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
 
rVersion - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
 

S

save(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Save the package to given filePath.
save(File) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Save package to a given File.
save(OutputStream) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
 
save(File) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
save(OutputStream) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
scanner - Variable in class uk.org.taverna.scufl2.api.io.structure.StructureReader
 
script - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
 
script - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
 
ScriptInputStatic - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ScriptInputStatic complex type.
ScriptInputStatic() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
 
ScriptInputStatic.Content - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for anonymous complex type.
ScriptInputStatic.Content() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
 
ScriptInputUser - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ScriptInputUser complex type.
ScriptInputUser() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
 
ScriptOutput - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for ScriptOutput complex type.
ScriptOutput() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
 
scriptvalue - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
 
ScriptvalueType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for scriptvalueType complex type.
ScriptvalueType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ScriptvalueType
 
Scufl2Tools - Class in uk.org.taverna.scufl2.api.common
Utility methods for dealing with SCUFL2 models
Scufl2Tools() - Constructor for class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
scufl2Tools - Variable in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
Scufl2Tools.BindingComparator - Class in uk.org.taverna.scufl2.api.common
Scufl2Tools.BindingComparator() - Constructor for class uk.org.taverna.scufl2.api.common.Scufl2Tools.BindingComparator
 
Scufl2Tools.ProcessorSplit - Class in uk.org.taverna.scufl2.api.common
Scufl2Tools.ProcessorSplit(Processor, Set<Processor>, Set<Processor>, Set<Processor>) - Constructor for class uk.org.taverna.scufl2.api.common.Scufl2Tools.ProcessorSplit
Construct a new processor split result.
scufl2Uri - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SoaplabActivityParser
 
scufl2Uri - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ErrorBounceParser
 
scufl2Uri - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.FailoverParser
 
scufl2Uri - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.InvokeParser
 
scufl2Uri - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.LoopParser
 
scufl2Uri - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.ParallelizeParser
 
scufl2Uri - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser
 
ScuflExtensionParser - Interface in uk.org.taverna.scufl2.translator.scufl
 
scuflExtensionParsers - Variable in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
ScuflParser - Class in uk.org.taverna.scufl2.translator.scufl
 
ScuflParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
ScuflReader - Class in uk.org.taverna.scufl2.translator.scufl
 
ScuflReader() - Constructor for class uk.org.taverna.scufl2.translator.scufl.ScuflReader
 
ScuflType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for scuflType complex type.
ScuflType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
 
secondaries - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
 
SECURITY - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLActivityParser
 
securityProfile - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
 
SeeAlso - Class in org.w3._2000._01.rdf_schema
Java class for anonymous complex type.
SeeAlso() - Constructor for class org.w3._2000._01.rdf_schema.SeeAlso
 
seeAlso - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
 
seeAlso - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.SeeAlsoType
 
seeAlso - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
 
seeAlso - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
 
SeeAlsoType - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for SeeAlsoType complex type.
SeeAlsoType() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.SeeAlsoType
 
seed - Variable in class org.w3._2000._09.xmldsig.DSAKeyValueType
 
SemanticAnnotation - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for SemanticAnnotation complex type.
SemanticAnnotation() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.SemanticAnnotation
 
semanticType - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MetadataType
 
SemanticTypeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for semanticTypeType complex type.
SemanticTypeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.SemanticTypeType
 
SenderPort - Interface in uk.org.taverna.scufl2.api.port
A Port that sends data out to a DataLink in a Workflow.
sendHTTPExpectRequestHeader - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
sendTo - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
 
service - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.InfernoType
 
serviceName - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
 
serviceName - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
 
serviceName - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
 
ServiceNameType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for serviceNameType complex type.
ServiceNameType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ServiceNameType
 
ServiceType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for serviceType complex type.
ServiceType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.ServiceType
 
serviceType - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
 
setAbout(String) - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource
Sets the value of the about property.
setAbout(String) - Method in class org.w3._1999._02._22_rdf_syntax_ns.Description
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Blocking
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.CrossProduct
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStackLayer
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DotProduct
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputActivityPort
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputPortBinding
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputProcessorPort
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputWorkflowPort
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputPortBinding
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputWorkflowPort
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.SeeAlsoType
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Sets the value of the about property.
setAbout(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Sets the value of the about property.
setAcceptsHeaderValue(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the acceptsHeaderValue property.
setAction(ActionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CoordinationType
Sets the value of the action property.
setActivities(Set<Activity>) - Method in class uk.org.taverna.scufl2.api.profiles.Profile
Sets the Activitys that this Profile contains.
setActivities(Activities) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Sets the value of the activities property.
setActivityInputs(ActivityInputs) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the activityInputs property.
setActivityPosition(Integer) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
Sets the relative position of the bound Activity within the processor (for the purpose of Failover).
setActivityPosition(ProcessorBinding.ActivityPosition) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Sets the value of the activityPosition property.
setAddition(Change) - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification.HasChange
Sets the value of the addition property.
setAdditionOf(Set<URI>) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
setAlgorithm(String) - Method in class org.w3._2000._09.xmldsig.CanonicalizationMethodType
Sets the value of the algorithm property.
setAlgorithm(String) - Method in class org.w3._2000._09.xmldsig.DigestMethodType
Sets the value of the algorithm property.
setAlgorithm(String) - Method in class org.w3._2000._09.xmldsig.SignatureMethodType
Sets the value of the algorithm property.
setAlgorithm(String) - Method in class org.w3._2000._09.xmldsig.TransformType
Sets the value of the algorithm property.
setAlgorithm(String) - Method in class org.w3._2001._04.xmlenc.AgreementMethodType
Sets the value of the algorithm property.
setAlgorithm(String) - Method in class org.w3._2001._04.xmlenc.EncryptionMethodType
Sets the value of the algorithm property.
setAlgorithm(Algorithm) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
 
setAllRows(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Sets the value of the allRows property.
setAnnotatedAt(Calendar) - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
setAnnotatedBy(URI) - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
setAnnotationAssertions(AnnotationAssertionImpl) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain.NetSfTavernaT2AnnotationAnnotationChainImpl
Sets the value of the annotationAssertions property.
setAnnotationBean(AnnotationBean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
Sets the value of the annotationBean property.
setAnnotations(NamedSet<Annotation>) - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
setAnnotations(Annotations) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Sets the value of the annotations property.
setAnnotations(Annotations) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedGranularDepthPort
Sets the value of the annotations property.
setAnnotations(Annotations) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotatedPort
Sets the value of the annotations property.
setAnnotations(Annotations) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Sets the value of the annotations property.
setAnnotations(Annotations) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Sets the value of the annotations property.
setAny(Object) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomartType
Sets the value of the any property.
setAny(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
Sets the value of the any property.
setApiConsumerDescription(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the apiConsumerDescription property.
setApiConsumerName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the apiConsumerName property.
setArraytype(ArraytypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
Sets the value of the arraytype property.
setArraytype(ArraytypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
Sets the value of the arraytype property.
setArticleName(ArticleNameType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
Sets the value of the articleName property.
setArticleNameUsedByService(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
Sets the value of the articleNameUsedByService property.
setArtifact(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArtifactType
Sets the value of the artifact property.
setArtifact(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Raven
Sets the value of the artifact property.
setArtifactDependencies(ArtifactDependencies) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the artifactDependencies property.
setArtifactDependencies(ArtifactDependencies) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Sets the value of the artifactDependencies property.
setArtifactId(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
Sets the value of the artifactId property.
setAuthor(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
Sets the value of the author property.
setAuthorityName(AuthorityNameType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
Sets the value of the authorityName property.
setAuthorityName(AuthorityNameType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
Sets the value of the authorityName property.
setAuthorityName(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
Sets the value of the authorityName property.
setBackoff(Double) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
Sets the value of the backoff property.
setBackoffFactor(double) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
Sets the value of the backoffFactor property.
setBase(String) - Method in class org.w3._1999._02._22_rdf_syntax_ns.RDF
Sets the value of the base property.
setBasetype(BasetypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
Sets the value of the basetype property.
setBeanshellinputlist(BeanshellinputlistType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
Sets the value of the beanshellinputlist property.
setBeanshelloutputlist(BeanshelloutputlistType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
Sets the value of the beanshelloutputlist property.
setBeanToUri(Map<WorkflowBean, URI>) - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
setBinary(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Sets the value of the binary property.
setBinary(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Sets the value of the binary property.
setBinary(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
Sets the value of the binary property.
setBindActivity(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Sets the value of the bindActivity property.
setBindInputActivityPort(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputPortBinding
Sets the value of the bindInputActivityPort property.
setBindInputProcessorPort(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputPortBinding
Sets the value of the bindInputProcessorPort property.
setBindOutputActivityPort(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputPortBinding
Sets the value of the bindOutputActivityPort property.
setBindOutputProcessorPort(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputPortBinding
Sets the value of the bindOutputProcessorPort property.
setBindProcessor(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Sets the value of the bindProcessor property.
setBlock(Processor) - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
Sets the Processor that is blocked from starting.
setBlock(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Blocking
Sets the value of the block property.
setBlocking(Blocking) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Control
Sets the value of the blocking property.
setBody(URI) - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
setBoring(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Sets the value of the boring property.
setBoundActivity(Activity) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
Sets the Activity that will be used to enact the Processor if this ProcessorBinding is used.
setBoundActivityPort(InputActivityPort) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorInputPortBinding
Sets the InputActivityPort to which data is actually sent when passed to the bound InputProcessorPort.
setBoundActivityPort(OutputActivityPort) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
Sets the OutputActivityPort from which data is received for the bound OutputProcessorPort.
setBoundActivityPort(A) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorPortBinding
Sets the ActivityPort which is passing data from/to the ProcessorPortBinding.getBoundProcessorPort().
setBoundProcessor(Processor) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
Sets the Processor for which a possible means of enactment is specified.
setBoundProcessorPort(InputProcessorPort) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorInputPortBinding
Sets the InputProcessorPort that the binding is for.
setBoundProcessorPort(OutputProcessorPort) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
Sets the OutputProcessorPort that the binding is for.
setBoundProcessorPort(P) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorPortBinding
Sets the ProcessorPort which is passing data to/from the ProcessorPortBinding.getBoundActivityPort().
setBreakpoint(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Sets the value of the breakpoint property.
setBreakpoint(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Sets the value of the breakpoint property.
setCanonicalizationMethod(CanonicalizationMethodType) - Method in class org.w3._2000._09.xmldsig.SignedInfoType
Sets the value of the canonicalizationMethod property.
setCarriedKeyName(String) - Method in class org.w3._2001._04.xmlenc.EncryptedKeyType
Sets the value of the carriedKeyName property.
setCategory(BioMobyCategory) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
Sets the value of the category property.
setChangeSpecification(ChangeSpecification) - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource.WasChangedBy
Sets the value of the changeSpecification property.
setChangeSpecificationType(URI) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
setCharsetName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Sets the value of the charsetName property.
setCharsetName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Sets the value of the charsetName property.
setChecksum(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
 
setChecksumType(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
 
setCipherData(CipherDataType) - Method in class org.w3._2001._04.xmlenc.EncryptedType
Sets the value of the cipherData property.
setCipherReference(CipherReferenceType) - Method in class org.w3._2001._04.xmlenc.CipherDataType
Sets the value of the cipherReference property.
setCipherValue(byte[]) - Method in class org.w3._2001._04.xmlenc.CipherDataType
Sets the value of the cipherValue property.
setClassloader(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DependenciesType
Sets the value of the classloader property.
setClassLoaderSharing(ClassLoaderSharing) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the classLoaderSharing property.
setClassLoaderSharing(ClassLoaderSharing) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Sets the value of the classLoaderSharing property.
setClassName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the className property.
setClazz(ClassType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Sets the value of the clazz property.
setClazz(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Sets the value of the clazz property.
setClazz(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
Sets the value of the clazz property.
setClazz(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationBean
Sets the value of the clazz property.
setClazz(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dependencies
Sets the value of the clazz property.
setClazz(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
Sets the value of the clazz property.
setClazz(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
Sets the value of the clazz property.
setClazz(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
Sets the value of the clazz property.
setColumnNames(SpreadsheetColumnNames) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Sets the value of the columnNames property.
setColumnRange(SpreadsheetRange) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Sets the value of the columnRange property.
setCommand(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the command property.
setComplextype(ComplextypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ElementtypeType
Sets the value of the complextype property.
setComplextype(ComplextypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
Sets the value of the complextype property.
setConcatenate(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Sets the value of the concatenate property.
setCondition(ConditionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CoordinationType
Sets the value of the condition property.
setConditions(Conditions) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Sets the value of the conditions property.
setConditionXML(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
Sets the value of the conditionXML property.
setConfigBean(ConfigBean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Sets the value of the configBean property.
setConfigBean(ConfigBean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
Sets the value of the configBean property.
setConfigurations(Set<Configuration>) - Method in class uk.org.taverna.scufl2.api.profiles.Profile
Sets the Configurations that this Profile contains.
setConfigure(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Sets the value of the configure property.
setConfigures(Configurable) - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
Set the Configurable WorkflowBean that is configured.
setConnectionSettings(RShellConnection) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Sets the value of the connectionSettings property.
setConstantStringValue(Processor, String, Profile) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
setConstructor(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
Sets the value of the constructor property.
setContent(ScriptInputStatic.Content) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Sets the value of the content property.
setContentTypeForUpdates(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the contentTypeForUpdates property.
setControl(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Condition
Sets the value of the control property.
setControlLinks(Set<ControlLink>) - Method in class uk.org.taverna.scufl2.api.core.Workflow
Set the ControlLinks to be the contents of the specified set.
setCreators(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
Sets the value of the creators property.
setCritical(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Sets the value of the critical property.
setCritical(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Sets the value of the critical property.
setCross(CrossType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CrossType
Sets the value of the cross property.
setCross(CrossType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DotType
Sets the value of the cross property.
setCross(CrossType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
Sets the value of the cross property.
setCross(CrossProduct) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
Sets the value of the cross property.
setCsvDelimiter(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Sets the value of the csvDelimiter property.
setCurationEventList(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
Sets the value of the curationEventList property.
setCurrentActivity(Activity) - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
setCurrentActivity(Activity) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setCurrentBase(URI) - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
setCurrentConfigurable(Configurable) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setCurrentConfiguration(Configuration) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setCurrentDispatchStack(DispatchStack) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setCurrentExtensionParser(ScuflExtensionParser) - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
setCurrentParser(ScuflParser) - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
setCurrentProcessor(Processor) - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
setCurrentProcessor(Processor) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setCurrentProcessorBinding(ProcessorBinding) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setCurrentProfile(Profile) - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
setCurrentProfile(Profile) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setCurrentRevision(Revision) - Method in interface uk.org.taverna.scufl2.api.annotation.Revisioned
Set the current Revision.
setCurrentRevision(Revision) - Method in class uk.org.taverna.scufl2.api.common.AbstractRevisioned
 
setCurrentT2Parser(T2Parser) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setCurrentWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
setCurrentWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setCurrentWorkflowBundle(WorkflowBundle) - Method in class uk.org.taverna.scufl2.translator.scufl.ParserState
 
setCurrentWorkflowBundle(WorkflowBundle) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setDataLink(DataLink) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLinkEntry
Sets the value of the dataLink property.
setDataLinkResolvedDepth(DataLink, Integer) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
setDataLinks(Set<DataLink>) - Method in class uk.org.taverna.scufl2.api.core.Workflow
Set the DataLinks to be the contents of the specified set.
setDatalinks(Datalinks) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Sets the value of the datalinks property.
setDatatype(String) - Method in class org.w3.prov.jaxb.GeneratedAtTime
Sets the value of the datatype property.
setDatatype(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink.MergePosition
Sets the value of the datatype property.
setDatatype(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.GranularPortDepth
Sets the value of the datatype property.
setDatatype(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortDepth
Sets the value of the datatype property.
setDatatype(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode.DesiredDepth
Sets the value of the datatype property.
setDatatype(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.ActivityPosition
Sets the value of the datatype property.
setDatatype(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Required
Sets the value of the datatype property.
setDatatype(DatatypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
Sets the value of the datatype property.
setDatatypeName(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
Sets the value of the datatypeName property.
setDate(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl
Sets the value of the date property.
setDefaults(DefaultsType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Sets the value of the defaults property.
setDependencies(DependenciesType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Sets the value of the dependencies property.
setDependencies(DependenciesType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
Sets the value of the dependencies property.
setDependencies(Dependencies) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Sets the value of the dependencies property.
setDepth(Integer) - Method in class uk.org.taverna.scufl2.api.port.AbstractDepthPort
Sets the depth of the Port.
setDepth(Integer) - Method in interface uk.org.taverna.scufl2.api.port.DepthPort
Sets the depth of the Port.
setDepth(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.FlattenlistType
Sets the value of the depth property.
setDepth(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SlicelistType
Sets the value of the depth property.
setDepth(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DepthPort
Sets the value of the depth property.
setDepth(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.PortProduct
Sets the value of the depth property.
setDescription(DescriptionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Sets the value of the description property.
setDescription(DescriptionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
Sets the value of the description property.
setDescription(DescriptionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MetadataType
Sets the value of the description property.
setDescription(DescriptionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Sets the value of the description property.
setDescription(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the description property.
setDescription(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the description property.
setDesiredDepth(Integer) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
setDesiredDepth(PortNode.DesiredDepth) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode
Sets the value of the desiredDepth property.
setDeUniLuebeckInbKnowarcUsecasesScriptInputUser(ScriptInputUser) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Entry
Sets the value of the deUniLuebeckInbKnowarcUsecasesScriptInputUser property.
setDeUniLuebeckInbKnowarcUsecasesScriptOutput(ScriptOutput) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Entry
Sets the value of the deUniLuebeckInbKnowarcUsecasesScriptOutput property.
setDigestMethod(DigestMethodType) - Method in class org.w3._2000._09.xmldsig.ReferenceType
Sets the value of the digestMethod property.
setDigestValue(byte[]) - Method in class org.w3._2000._09.xmldsig.ReferenceType
Sets the value of the digestValue property.
setDimension(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
Sets the value of the dimension property.
setDimension(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
Sets the value of the dimension property.
setDispatchStack(DispatchStack) - Method in class uk.org.taverna.scufl2.api.core.Processor
Sets the DispatchStack.
setDispatchStack(DispatchStack) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.DispatchStack
Sets the value of the dispatchStack property.
setDispatchStack(Processor.DispatchStack) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
Sets the value of the dispatchStack property.
setDispatchStack(DispatchStack) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Sets the value of the dispatchStack property.
setDispatchStackLayers(DispatchStack.DispatchStackLayers) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack
Sets the value of the dispatchStackLayers property.
setDot(DotType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CrossType
Sets the value of the dot property.
setDot(DotType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DotType
Sets the value of the dot property.
setDot(DotType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
Sets the value of the dot property.
setDot(DotProduct) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
Sets the value of the dot property.
setEdited(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Sets the value of the edited property.
setElement(DependencyElement) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
Sets the value of the element property.
setElements(ElementsType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Sets the value of the elements property.
setElementtype(ElementtypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Sets the value of the elementtype property.
setEmptyCellPolicy(SpreadsheetEmptyCellPolicy) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Sets the value of the emptyCellPolicy property.
setEmptyCellValue(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Sets the value of the emptyCellValue property.
setEncoding(String) - Method in class org.w3._2000._09.xmldsig.ObjectType
Sets the value of the encoding property.
setEncoding(String) - Method in class org.w3._2001._04.xmlenc.EncryptedType
Sets the value of the encoding property.
setEncoding(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
Sets the value of the encoding property.
setEncoding(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.OriginalConfigBean
Sets the value of the encoding property.
setEncryption(Container.Encryption) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Sets the value of the encryption property.
setEncryptionData(EncryptionData) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
 
setEncryptionMethod(EncryptionMethodType) - Method in class org.w3._2001._04.xmlenc.EncryptedType
Sets the value of the encryptionMethod property.
setEncryptionProperties(EncryptionPropertiesType) - Method in class org.w3._2001._04.xmlenc.EncryptedType
Sets the value of the encryptionProperties property.
setEnd(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
Sets the value of the end property.
setEndpoint(EndpointType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyparserType
Sets the value of the endpoint property.
setEndpoint(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
Sets the value of the endpoint property.
setEscapeParameters(Boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the escapeParameters property.
setEventListener(StructuralValidationListener) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
setExcludeFirstRow(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Sets the value of the excludeFirstRow property.
setExcludes(SpreadsheetExcludes) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
Sets the value of the excludes property.
setExecutionTimeoutInSeconds(int) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the executionTimeoutInSeconds property.
setExponent(byte[]) - Method in class org.w3._2000._09.xmldsig.RSAKeyValueType
Sets the value of the exponent property.
setExternaltoolid(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Sets the value of the externaltoolid property.
setFile(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Sets the value of the file property.
setFile(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Sets the value of the file property.
setFlattenlist(FlattenlistType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
Sets the value of the flattenlist property.
setForceCopy(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Sets the value of the forceCopy property.
setForceCopy(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Sets the value of the forceCopy property.
setFrom(StatusCodeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.StatechangeType
Sets the value of the from property.
setFrom(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Mapping
Sets the value of the from property.
setFromVersion(Resource) - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification
Sets the value of the fromVersion property.
setFullPath(String) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.RootFile
Sets the value of the fullPath property.
setG(byte[]) - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Sets the value of the g property.
setGeneratedAtTime(GeneratedAtTime) - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource
Sets the value of the generatedAtTime property.
setGeneratedAtTime(Calendar) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
setGlobalBaseURI(URI) - Method in interface uk.org.taverna.scufl2.api.common.Root
 
setGlobalBaseURI(URI) - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
setGlobalBaseURI(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Sets the value of the globalBaseURI property.
setGranularDepth(Integer) - Method in class uk.org.taverna.scufl2.api.port.AbstractGranularDepthPort
Sets the granular depth of the Port.
setGranularDepth(Integer) - Method in interface uk.org.taverna.scufl2.api.port.GranularDepthPort
Sets the granular depth of the Port.
setGranularDepth(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.GranularDepthPort
Sets the value of the granularDepth property.
setGranularPortDepth(GranularPortDepth) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
Sets the value of the granularPortDepth property.
setGranularPortDepth(GranularPortDepth) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
Sets the value of the granularPortDepth property.
setGroup(Group) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Sets the value of the group property.
setGroup(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Raven
Sets the value of the group property.
setGroup(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the group property.
setGroupId(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArtifactType
Sets the value of the groupId property.
setGroupId(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
Sets the value of the groupId property.
setHadOriginalSources(Set<Revision>) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
setHashCode(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
Sets the value of the hashCode property.
setHost(HostType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InfernoType
Sets the value of the host property.
setHost(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Sets the value of the host property.
setHostname(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Sets the value of the hostname property.
setHttpMethod(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the httpMethod property.
setId(String) - Method in class org.w3._2000._09.xmldsig.KeyInfoType
Sets the value of the id property.
setId(String) - Method in class org.w3._2000._09.xmldsig.ManifestType
Sets the value of the id property.
setId(String) - Method in class org.w3._2000._09.xmldsig.ObjectType
Sets the value of the id property.
setId(String) - Method in class org.w3._2000._09.xmldsig.ReferenceType
Sets the value of the id property.
setId(String) - Method in class org.w3._2000._09.xmldsig.SignaturePropertiesType
Sets the value of the id property.
setId(String) - Method in class org.w3._2000._09.xmldsig.SignaturePropertyType
Sets the value of the id property.
setId(String) - Method in class org.w3._2000._09.xmldsig.SignatureType
Sets the value of the id property.
setId(String) - Method in class org.w3._2000._09.xmldsig.SignatureValueType
Sets the value of the id property.
setId(String) - Method in class org.w3._2000._09.xmldsig.SignedInfoType
Sets the value of the id property.
setId(String) - Method in class org.w3._2001._04.xmlenc.EncryptedType
Sets the value of the id property.
setId(String) - Method in class org.w3._2001._04.xmlenc.EncryptionPropertiesType
Sets the value of the id property.
setId(String) - Method in class org.w3._2001._04.xmlenc.EncryptionPropertyType
Sets the value of the id property.
setId(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Sets the value of the id property.
setId(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Sets the value of the id property.
setId(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Sets the value of the id property.
setIdentifier(URI) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
setIdentifier(URI) - Method in interface uk.org.taverna.scufl2.api.annotation.Revisioned
Set the identifier.
setIdentifier(URI) - Method in class uk.org.taverna.scufl2.api.common.AbstractRevisioned
Set the identifier.
setIgnoreBlankRows(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Sets the value of the ignoreBlankRows property.
setIncludeStdErr(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the includeStdErr property.
setIncludeStdIn(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the includeStdIn property.
setIncludeStdOut(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the includeStdOut property.
setInitialDelay(long) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
Sets the value of the initialDelay property.
setInitializationVector(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.Algorithm
 
setInput(NodeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
Sets the value of the input property.
setInput(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MergemodeType
Sets the value of the input property.
setInputActivityPort(InputActivityPort) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity.InputActivityPort
Sets the value of the inputActivityPort property.
setInputMap(Map) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Sets the value of the inputMap property.
setInputPortBinding(InputPortBinding) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.InputPortBinding
Sets the value of the inputPortBinding property.
setInputPortBindings(Set<ProcessorInputPortBinding>) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
Sets the bindings for individual input ports of the bound Processor.
setInputPorts(Set<InputActivityPort>) - Method in class uk.org.taverna.scufl2.api.activity.Activity
Set the InputActivityPorts to be the contents of the specified set.
setInputPorts(Set<InputProcessorPort>) - Method in class uk.org.taverna.scufl2.api.core.Processor
Sets the input ports.
setInputPorts(Set<InputWorkflowPort>) - Method in class uk.org.taverna.scufl2.api.core.Workflow
Set the InputWorkflowPorts to be the contents of the specified set.
setInputPorts(AnnotatedGranularDepthPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Sets the value of the inputPorts property.
setInputPorts(DepthPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Sets the value of the inputPorts property.
setInputProcessorPort(InputProcessorPort) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
setInputProcessorPort(InputProcessorPort) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.InputProcessorPort
Sets the value of the inputProcessorPort property.
setInputs(ActivityInputPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the inputs property.
setInputs(ActivityInputPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Sets the value of the inputs property.
setInputs(ActivityInputPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Sets the value of the inputs property.
setInputs(EntryMap) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the inputs property.
setInputs(ActivityInputPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
Sets the value of the inputs property.
setInputSymanticTypes(RShellSymanticType) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Sets the value of the inputSymanticTypes property.
setInputWorkflowPort(InputWorkflowPort) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.InputWorkflowPort
Sets the value of the inputWorkflowPort property.
setInterval(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
Sets the value of the interval property.
setInvocationGroupName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
Sets the value of the invocationGroupName property.
setIsMethodConstructor(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the isMethodConstructor property.
setIsMethodStatic(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the isMethodStatic property.
setIterateOverInputPort(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode
Sets the value of the iterateOverInputPort property.
setIteration(Iteration) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.IterationStrategyStack
Sets the value of the iteration property.
setIterationCount(int) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
 
setIterationStrategies(IterationStrategyStack.IterationStrategies) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack
Sets the value of the iterationStrategies property.
setIterationstrategy(IterationstrategyType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Sets the value of the iterationstrategy property.
setIterationStrategyStack(IterationStrategyStack) - Method in class uk.org.taverna.scufl2.api.core.Processor
Sets the IterationStrategyStack.
setIterationStrategyStack(IterationStrategyStack) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.IterationStrategyStack
Sets the value of the iterationStrategyStack property.
setIterationStrategyStack(Processor.IterationStrategyStack) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
Sets the value of the iterationStrategyStack property.
setIterationStrategyStack(IterationStrategyStack) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Sets the value of the iterationStrategyStack property.
setIterator(IteratorType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CrossType
Sets the value of the iterator property.
setIterator(IteratorType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DotType
Sets the value of the iterator property.
setIterator(IteratorType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.IterationstrategyType
Sets the value of the iterator property.
setJ(byte[]) - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Sets the value of the j property.
setJavaClass(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
Sets the value of the javaClass property.
setJaxbContext(JAXBContext) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
setJson(JsonNode) - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
Set the underlying JSON JsonNode which contains the properties set by this configuration.
setJson(String) - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
 
setJsonSchema(JsonNode) - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
 
setJsonSchema(String) - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
 
setKeepSessionAlive(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Sets the value of the keepSessionAlive property.
setKeepSessionAlive(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Sets the value of the keepSessionAlive property.
setKey(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MapType
Sets the value of the key property.
setKeyDerivation(KeyDerivation) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.EncryptionData
 
setKeyInfo(KeyInfoType) - Method in class org.w3._2000._09.xmldsig.SignatureType
Sets the value of the keyInfo property.
setKeyInfo(KeyInfoType) - Method in class org.w3._2001._04.xmlenc.EncryptedType
Sets the value of the keyInfo property.
setList(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Sets the value of the list property.
setLocalDependencies(LocalDependencies) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the localDependencies property.
setLocalDependencies(LocalDependencies) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Sets the value of the localDependencies property.
setLocalworkerName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Sets the value of the localworkerName property.
setLocation(URI) - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
setLocation(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig.MartService
Sets the value of the location property.
setLog(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Sets the value of the log property.
setLog(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Sets the value of the log property.
setLsid(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
Sets the value of the lsid property.
setMainProfile(Profile) - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
setMainProfile(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Sets the value of the mainProfile property.
setMainWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
setMainWorkflow(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Sets the value of the mainWorkflow property.
setMartDataset(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
Sets the value of the martDataset property.
setMartService(BioMartConfig.MartService) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
Sets the value of the martService property.
setMaxDelay(long) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
Sets the value of the maxDelay property.
setMaxinterval(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
Sets the value of the maxinterval property.
setMaxJobs(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ParallelizeConfig
Sets the value of the maxJobs property.
setMaxretries(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Sets the value of the maxretries property.
setMaxretries(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Sets the value of the maxretries property.
setMaxRetries(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RetryConfig
Sets the value of the maxRetries property.
setMechanismName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Sets the value of the mechanismName property.
setMechanismName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
Sets the value of the mechanismName property.
setMechanismType(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Sets the value of the mechanismType property.
setMechanismType(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
Sets the value of the mechanismType property.
setMechanismXML(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Sets the value of the mechanismXML property.
setMechanismXML(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Group
Sets the value of the mechanismXML property.
setMediaType(String) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.RootFile
Sets the value of the mediaType property.
setMediaType(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
 
setMediaType(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage
Set the media type of the ODF package (equal to media type of ODF root document)
setMergePosition(Integer) - Method in class uk.org.taverna.scufl2.api.core.DataLink
Sets the position that this DataLink should join a merge.
setMergePosition(DataLink.MergePosition) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
Sets the value of the mergePosition property.
setMetadata(MetadataType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SinkType
Sets the value of the metadata property.
setMetadata(MetadataType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SourceType
Sets the value of the metadata property.
setMethod(MethodType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Sets the value of the method property.
setMethodName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the methodName property.
setMime(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Sets the value of the mime property.
setMime(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
Sets the value of the mime property.
setMimeType(String) - Method in class org.w3._2000._09.xmldsig.ObjectType
Sets the value of the mimeType property.
setMimeType(String) - Method in class org.w3._2001._04.xmlenc.EncryptedType
Sets the value of the mimeType property.
setMimeType(MimeTypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MimeTypes
Sets the value of the mimeType property.
setMimeTypes(MimeTypes) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MetadataType
Sets the value of the mimeTypes property.
setMobyEndpoint(MobyEndpointType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
Sets the value of the mobyEndpoint property.
setMobyEndpoint(MobyEndpointType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
Sets the value of the mobyEndpoint property.
setMobyEndpoint(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
Sets the value of the mobyEndpoint property.
setMode(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MergemodeType
Sets the value of the mode property.
setMode(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SinkType
Sets the value of the mode property.
setModification(Change) - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification.HasChange
Sets the value of the modification property.
setModificationsOf(Set<URI>) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
setModulus(byte[]) - Method in class org.w3._2000._09.xmldsig.RSAKeyValueType
Sets the value of the modulus property.
setName(String) - Method in class uk.org.taverna.scufl2.api.common.AbstractNamed
 
setName(String) - Method in interface uk.org.taverna.scufl2.api.common.Named
Sets the name of the WorkflowBean.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputActivityPort
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputProcessorPort
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputWorkflowPort
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputWorkflowPort
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Profile
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.Algorithm
 
setName(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
 
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ClassType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.CoordinationType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DefaultType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.IteratorType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SinkType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SourceType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplatePortReferenceType
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Port
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.PortProduct
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Property
Sets the value of the name property.
setName(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
Sets the value of the name property.
setNetSfTavernaT2AnnotationAnnotationAssertionImpl(AnnotationAssertionImpl.NetSfTavernaT2AnnotationAnnotationAssertionImpl) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationAssertionImpl
Sets the value of the netSfTavernaT2AnnotationAnnotationAssertionImpl property.
setNetSfTavernaT2AnnotationAnnotationChainImpl(AnnotationChain.NetSfTavernaT2AnnotationAnnotationChainImpl) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.AnnotationChain
Sets the value of the netSfTavernaT2AnnotationAnnotationChainImpl property.
setNewRVersion(Boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Sets the value of the newRVersion property.
setOperation(OperationType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Sets the value of the operation property.
setOperation(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
Sets the value of the operation property.
setOptional(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Sets the value of the optional property.
setOptional(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Sets the value of the optional property.
setOptional(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Sets the value of the optional property.
setOtherHTTPHeaders(HTTPHeaders) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the otherHTTPHeaders property.
setOutgoingDataFormat(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the outgoingDataFormat property.
setOutput(NodeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
Sets the value of the output property.
setOutputActivityPort(OutputActivityPort) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity.OutputActivityPort
Sets the value of the outputActivityPort property.
setOutputFormat(OutputFormat) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Sets the value of the outputFormat property.
setOutputMap(Map) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Sets the value of the outputMap property.
setOutputPortBinding(OutputPortBinding) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.OutputPortBinding
Sets the value of the outputPortBinding property.
setOutputPortBindings(Set<ProcessorOutputPortBinding>) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
Sets the bindings for individual output ports of the bound Processor.
setOutputPorts(Set<OutputActivityPort>) - Method in class uk.org.taverna.scufl2.api.activity.Activity
Set the OutputActivityPorts to be the contents of the specified set.
setOutputPorts(Set<OutputProcessorPort>) - Method in class uk.org.taverna.scufl2.api.core.Processor
Sets the output ports.
setOutputPorts(Set<OutputWorkflowPort>) - Method in class uk.org.taverna.scufl2.api.core.Workflow
Set the OutputWorkflowPorts to be the contents of the specified set.
setOutputPorts(AnnotatedPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Sets the value of the outputPorts property.
setOutputPorts(GranularDepthPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Processor
Sets the value of the outputPorts property.
setOutputProcessorPort(OutputProcessorPort) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Processor.OutputProcessorPort
Sets the value of the outputProcessorPort property.
setOutputs(ActivityOutputPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the outputs property.
setOutputs(ActivityOutputPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Sets the value of the outputs property.
setOutputs(ActivityOutputPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Sets the value of the outputs property.
setOutputs(EntryMap) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the outputs property.
setOutputs(ActivityOutputPorts) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
Sets the value of the outputs property.
setOutputSymanticTypes(RShellSymanticType) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Sets the value of the outputSymanticTypes property.
setOutputWorkflowPort(OutputWorkflowPort) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.OutputWorkflowPort
Sets the value of the outputWorkflowPort property.
setP(byte[]) - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Sets the value of the p property.
setPackageMediaType(String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
setParameterDimensions(ApiConsumerParameterDimensions) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the parameterDimensions property.
setParameterNames(ApiConsumerParameterNames) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the parameterNames property.
setParameterTypes(ApiConsumerParameterTypes) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the parameterTypes property.
setParent(Profile) - Method in class uk.org.taverna.scufl2.api.activity.Activity
 
setParent(WorkflowBundle) - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
setParent(T) - Method in interface uk.org.taverna.scufl2.api.common.Child
Sets the parent of this workflow bean.
setParent(Profile) - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
 
setParent(Workflow) - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
 
setParent(Workflow) - Method in class uk.org.taverna.scufl2.api.core.DataLink
 
setParent(Workflow) - Method in class uk.org.taverna.scufl2.api.core.Processor
 
setParent(WorkflowBundle) - Method in class uk.org.taverna.scufl2.api.core.Workflow
 
setParent(Processor) - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStack
 
setParent(DispatchStack) - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStackLayer
 
setParent(IterationStrategyParent) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.CrossProduct
 
setParent(IterationStrategyParent) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.DotProduct
 
setParent(Processor) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.IterationStrategyStack
 
setParent(IterationStrategyParent) - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
setParent(Activity) - Method in class uk.org.taverna.scufl2.api.port.InputActivityPort
 
setParent(Processor) - Method in class uk.org.taverna.scufl2.api.port.InputProcessorPort
 
setParent(Workflow) - Method in class uk.org.taverna.scufl2.api.port.InputWorkflowPort
 
setParent(Activity) - Method in class uk.org.taverna.scufl2.api.port.OutputActivityPort
 
setParent(Processor) - Method in class uk.org.taverna.scufl2.api.port.OutputProcessorPort
 
setParent(Workflow) - Method in class uk.org.taverna.scufl2.api.port.OutputWorkflowPort
 
setParent(Profile) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
 
setParent(ProcessorBinding) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorInputPortBinding
 
setParent(ProcessorBinding) - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
 
setParent(WorkflowBundle) - Method in class uk.org.taverna.scufl2.api.profiles.Profile
 
setParents(WorkflowBundle) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
setParser(ScuflParser) - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflReader
 
setParser(T2FlowParser) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
setParserState(ParserState) - Method in class uk.org.taverna.scufl2.translator.scufl.processorelement.AbstractExtensionParser
 
setParserState(ParserState) - Method in interface uk.org.taverna.scufl2.translator.scufl.ScuflExtensionParser
 
setParseType(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack.DispatchStackLayers
Sets the value of the parseType property.
setParseType(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.IterationStrategyStack.IterationStrategies
Sets the value of the parseType property.
setParseType(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProductOf
Sets the value of the parseType property.
setPassword(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Sets the value of the password property.
setPassword(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Sets the value of the password property.
setPath(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
 
setPath(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptOutput
Sets the value of the path property.
setPgenCounter(byte[]) - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Sets the value of the pgenCounter property.
setPollingBackoff(double) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
Sets the value of the pollingBackoff property.
setPollingInterval(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
Sets the value of the pollingInterval property.
setPollingIntervalMax(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
Sets the value of the pollingIntervalMax property.
setPort(PortType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InfernoType
Sets the value of the port property.
setPort(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Sets the value of the port property.
setPort(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Link
Sets the value of the port property.
setPort(int) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Sets the value of the port property.
setPortDepth(PortDepth) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputActivityPort
Sets the value of the portDepth property.
setPortDepth(PortDepth) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputProcessorPort
Sets the value of the portDepth property.
setPortDepth(PortDepth) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.InputWorkflowPort
Sets the value of the portDepth property.
setPortDepth(PortDepth) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputActivityPort
Sets the value of the portDepth property.
setPortDepth(PortDepth) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.OutputProcessorPort
Sets the value of the portDepth property.
setPortResolvedDepth(Port, Integer) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
setPrefixMapper(Marshaller) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
setPreparingTimeoutInSeconds(int) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the preparingTimeoutInSeconds property.
setPreviousRevision(Revision) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
setProcessor(Processor) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.Processor
Sets the value of the processor property.
setProcessor(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
setProcessor(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Link
Sets the value of the processor property.
setProcessorBindings(Set<ProcessorBinding>) - Method in class uk.org.taverna.scufl2.api.profiles.Profile
Sets the bindings for individual Processors.
setProcessorElement(JAXBElement<?>) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Sets the value of the processorElement property.
setProcessors(Set<Processor>) - Method in class uk.org.taverna.scufl2.api.core.Workflow
Set the Processors to be the contents of the specified set.
setProcessors(Processors) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Sets the value of the processors property.
setProducedBy(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Workflow
Sets the value of the producedBy property.
setProductOf(ProductOf) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.CrossProduct
Sets the value of the productOf property.
setProductOf(ProductOf) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DotProduct
Sets the value of the productOf property.
setProfile(SeeAlsoType) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle.Profile
Sets the value of the profile property.
setProfilePosition(Integer) - Method in class uk.org.taverna.scufl2.api.profiles.Profile
Sets the position of this profile within the WorkflowBundle.
setProfiles(Set<Profile>) - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
setProperties(Properties) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
Sets the value of the properties property.
setQ(byte[]) - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Sets the value of the q property.
setQname(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Sets the value of the qname property.
setQname(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Sets the value of the qname property.
setQname(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Sets the value of the qname property.
setQuery(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMartConfig
Sets the value of the query property.
setQueueDeny(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the queueDeny property.
setQueuePreferred(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the queuePreferred property.
setRaven(Raven) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Activity
Sets the value of the raven property.
setRaven(Raven) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DispatchLayer
Sets the value of the raven property.
setReaders(List<WorkflowBundleReader>) - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Sets the WorkflowBundleReaders.
setReceiveFrom(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
Sets the value of the receiveFrom property.
setReceivesFrom(SenderPort) - Method in class uk.org.taverna.scufl2.api.core.DataLink
Returns the SenderPort that this DataLink receives data from.
setRecipient(String) - Method in class org.w3._2001._04.xmlenc.EncryptedKeyType
Sets the value of the recipient property.
setRef(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataflowConfig
Sets the value of the ref property.
setReference(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
Sets the value of the reference property.
setReferenceList(ReferenceList) - Method in class org.w3._2001._04.xmlenc.EncryptedKeyType
Sets the value of the referenceList property.
setRegistryEndpoint(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyParserConfig
Sets the value of the registryEndpoint property.
setRelationships(Container.Relationships) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Sets the value of the relationships property.
setRemoval(Change) - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification.HasChange
Sets the value of the removal property.
setRemovalOf(Set<URI>) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
setRepositories(RepositoriesType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiconsumerType
Sets the value of the repositories property.
setRepositories(RepositoriesType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
Sets the value of the repositories property.
setRepositoryUrl(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Sets the value of the repositoryUrl property.
setRepositoryUrl(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
Sets the value of the repositoryUrl property.
setREs(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the rEs property.
setResource(String) - Method in class org.w3._1999._02._22_rdf_syntax_ns.Resource
Sets the value of the resource property.
setResource(String) - Method in class org.w3._1999._02._22_rdf_syntax_ns.Type
Sets the value of the resource property.
setResource(String) - Method in class org.w3._2000._01.rdf_schema.Domain
Sets the value of the resource property.
setResource(String) - Method in class org.w3._2000._01.rdf_schema.Range
Sets the value of the resource property.
setResource(String) - Method in class org.w3._2000._01.rdf_schema.SeeAlso
Sets the value of the resource property.
setResource(String) - Method in class org.w3._2000._01.rdf_schema.SubClassOf
Sets the value of the resource property.
setResource(String) - Method in class org.w3._2000._01.rdf_schema.SubPropertyOf
Sets the value of the resource property.
setResource(String) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ConfigurationType
Sets the value of the resource property.
setResources(UCFPackage) - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
setRetrybackoff(Double) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Sets the value of the retrybackoff property.
setRetrybackoff(Double) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Sets the value of the retrybackoff property.
setRetrydelay(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Sets the value of the retrydelay property.
setRetrydelay(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LocalType
Sets the value of the retrydelay property.
setReturnDimension(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the returnDimension property.
setReturnType(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerConfig
Sets the value of the returnType property.
setRole(Role) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dataflow
Sets the value of the role property.
setRootFile(String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
setRowRange(SpreadsheetRange) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
Sets the value of the rowRange property.
setRunFirst(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LoopConfig
Sets the value of the runFirst property.
setRVersion(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Sets the value of the rVersion property.
setSalt(String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.KeyDerivation
 
setScript(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BeanshellConfig
Sets the value of the script property.
setScript(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConfig
Sets the value of the script property.
setScriptvalue(ScriptvalueType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellType
Sets the value of the scriptvalue property.
setSecondaries(BioMobySecondaries) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
Sets the value of the secondaries property.
setSecurityProfile(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
Sets the value of the securityProfile property.
setSeeAlso(SeeAlso) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Sets the value of the seeAlso property.
setSeeAlso(SeeAlso) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.SeeAlsoType
Sets the value of the seeAlso property.
setSeeAlso(SeeAlso) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Sets the value of the seeAlso property.
setSeed(byte[]) - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Sets the value of the seed property.
setSemanticType(SemanticTypeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MetadataType
Sets the value of the semanticType property.
setSendHTTPExpectRequestHeader(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the sendHTTPExpectRequestHeader property.
setSendsTo(ReceiverPort) - Method in class uk.org.taverna.scufl2.api.core.DataLink
Sets the ReceiverPort that this DataLink sends data to.
setSendTo(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink
Sets the value of the sendTo property.
setSerializedAt(Calendar) - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
setSerializedBy(URI) - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
setService(ServiceType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InfernoType
Sets the value of the service property.
setServiceName(ServiceNameType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyobjectType
Sets the value of the serviceName property.
setServiceName(ServiceNameType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobywsdlType
Sets the value of the serviceName property.
setServiceName(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyObjectConfig
Sets the value of the serviceName property.
setServiceType(BioMobyServiceType) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyConfig
Sets the value of the serviceType property.
setShowActualUrlPort(Boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the showActualUrlPort property.
setShowRedirectionOutputPort(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the showRedirectionOutputPort property.
setShowResponseHeadersPort(Boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the showResponseHeadersPort property.
setSignatureMethod(SignatureMethodType) - Method in class org.w3._2000._09.xmldsig.SignedInfoType
Sets the value of the signatureMethod property.
setSignatures(Container.Signatures) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Sets the value of the signatures property.
setSignatureValue(SignatureValueType) - Method in class org.w3._2000._09.xmldsig.SignatureType
Sets the value of the signatureValue property.
setSignedInfo(SignedInfoType) - Method in class org.w3._2000._09.xmldsig.SignatureType
Sets the value of the signedInfo property.
setSink(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
Sets the value of the sink property.
setSink(Link) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataLink
Sets the value of the sink property.
setSize(int) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest.OdfFileEntry
 
setSlicelist(SlicelistType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
Sets the value of the slicelist property.
setSource(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
Sets the value of the source property.
setSource(Link) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataLink
Sets the value of the source property.
setStack(Stack<WorkflowBean>) - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
setStart(BigInteger) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
Sets the value of the start property.
setState(ConditionStateType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionType
Sets the value of the state property.
setStatechange(StatechangeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ActionType
Sets the value of the statechange property.
setStatic(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
Sets the value of the static property.
setStaticInputs(StaticInputs) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the staticInputs property.
setStrict(boolean) - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
setStrict(boolean) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
setString(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
Sets the value of the string property.
setString(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
Sets the value of the string property.
setString(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Entry
Sets the value of the string property.
setSymanticType(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
Sets the value of the symanticType property.
setSymanticType(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
Sets the value of the symanticType property.
setSymanticType(RShellSymanticType.RShellPortSymanticTypeBean.SymanticType) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
Sets the value of the symanticType property.
setSyntactictype(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
Sets the value of the syntactictype property.
setSyntactictype(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
Sets the value of the syntactictype property.
setSyntacticType(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InputPortType
Sets the value of the syntacticType property.
setSyntacticType(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.OutputPortType
Sets the value of the syntacticType property.
setSyntacticType(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
Sets the value of the syntacticType property.
setSyntacticType(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
Sets the value of the syntacticType property.
setT2FlowParser(T2FlowParser) - Method in class uk.org.taverna.scufl2.translator.t2flow.ParserState
 
setT2Parsers(Set<T2Parser>) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
setTag(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Sets the value of the tag property.
setTag(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Sets the value of the tag property.
setTags(Object) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the tags property.
setTarget(String) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Relationship
Sets the value of the target property.
setTarget(String) - Method in class org.w3._2000._09.xmldsig.SignaturePropertyType
Sets the value of the target property.
setTarget(String) - Method in class org.w3._2001._04.xmlenc.EncryptionPropertyType
Sets the value of the target property.
setTarget(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.annotation.Annotation
 
setTarget(TargetType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ActionType
Sets the value of the target property.
setTarget(TargetType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionType
Sets the value of the target property.
setTarget(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Condition
Sets the value of the target property.
setTempFile(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Sets the value of the tempFile property.
setTempFile(boolean) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
Sets the value of the tempFile property.
setTemplate(TemplateType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Sets the value of the template property.
setTestLocal(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the testLocal property.
setTitle(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
Sets the value of the title property.
setTo(StatusCodeType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.StatechangeType
Sets the value of the to property.
setTo(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Mapping
Sets the value of the to property.
setTransforms(TransformsType) - Method in class org.w3._2000._09.xmldsig.ReferenceType
Sets the value of the transforms property.
setTransforms(TransformsType) - Method in class org.w3._2000._09.xmldsig.RetrievalMethodType
Sets the value of the transforms property.
setTransforms(TransformsType) - Method in class org.w3._2001._04.xmlenc.CipherReferenceType
Sets the value of the transforms property.
setType(String) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Relationship
Sets the value of the type property.
setType(Type) - Method in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification
Sets the value of the type property.
setType(String) - Method in class org.w3._2000._09.xmldsig.ReferenceType
Sets the value of the type property.
setType(String) - Method in class org.w3._2000._09.xmldsig.RetrievalMethodType
Sets the value of the type property.
setType(String) - Method in class org.w3._2001._04.xmlenc.EncryptedType
Sets the value of the type property.
setType(URI) - Method in class uk.org.taverna.scufl2.api.activity.Activity
Sets the type of the Activity.
setType(URI) - Method in interface uk.org.taverna.scufl2.api.common.Typed
Sets the type of the WorkflowBean.
setType(URI) - Method in class uk.org.taverna.scufl2.api.configurations.Configuration
Set the type of the Configuration.
setType(URI) - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStack
TODO find out what this is for
setType(URI) - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStackLayer
Sets the type of the DispatchStackLayer.
setType(Type) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
Sets the value of the type property.
setType(Type) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
Sets the value of the type property.
setType(Type) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack
Sets the value of the type property.
setType(Type) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStackLayer
Sets the value of the type property.
setType(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
Sets the value of the type property.
setType(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
Sets the value of the type property.
setType(LinkType) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Link
Sets the value of the type property.
setTypename(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Sets the value of the typename property.
setTypename(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Sets the value of the typename property.
setTypename(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Sets the value of the typename property.
setUcfPackage(UCFPackage) - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
setUnbounded(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Sets the value of the unbounded property.
setUnbounded(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Sets the value of the unbounded property.
setUnbounded(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Sets the value of the unbounded property.
setUntilFinished(Processor) - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
Sets the Processor that controls the block.
setUntilFinished(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Blocking
Sets the value of the untilFinished property.
setURI(String) - Method in class org.w3._2000._09.xmldsig.ReferenceType
Sets the value of the uri property.
setURI(String) - Method in class org.w3._2000._09.xmldsig.RetrievalMethodType
Sets the value of the uri property.
setURI(String) - Method in class org.w3._2001._04.xmlenc.CipherReferenceType
Sets the value of the uri property.
setURI(String) - Method in class org.w3._2001._04.xmlenc.ReferenceType
Sets the value of the uri property.
setUriToBean(Map<URI, WorkflowBean>) - Method in class uk.org.taverna.scufl2.rdfxml.ParserState
 
setUriTools(URITools) - Static method in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
setUriTools(URITools) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.DataflowActivityParser
 
setUrl(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
Sets the value of the url property.
setUrlSignature(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
Sets the value of the urlSignature property.
setUseCaseDescription(UsecaseDescription) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
Sets the value of the useCaseDescription property.
setUsecaseid(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
Sets the value of the usecaseid property.
setUsecaseid(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the usecaseid property.
setUsername(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
Sets the value of the username property.
setUsername(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
Sets the value of the username property.
setUsingSchema(boolean) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
setValidating(boolean) - Method in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
setValidating(boolean) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
setValidReturnCodes(ReturnCodes) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
Sets the value of the validReturnCodes property.
setValue(byte[]) - Method in class org.w3._2000._09.xmldsig.SignatureValueType
Sets the value of the value property.
setValue(XMLGregorianCalendar) - Method in class org.w3.prov.jaxb.GeneratedAtTime
Sets the value of the value property.
setValue(int) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink.MergePosition
Sets the value of the value property.
setValue(int) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.GranularPortDepth
Sets the value of the value property.
setValue(int) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortDepth
Sets the value of the value property.
setValue(int) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode.DesiredDepth
Sets the value of the value property.
setValue(int) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.ActivityPosition
Sets the value of the value property.
setValue(boolean) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Required
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArticleNameType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.AuthorityNameType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionStateType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DatatypeType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DefaultType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.DescriptionType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.EndpointType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.HostType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.InputPortType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.JarfileType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MapType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MimeTypeType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.MobyEndpointType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.NodeType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.OperationType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.OutputPortType
Sets the value of the value property.
setValue(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.PortType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RepositoryType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScriptvalueType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SemanticTypeType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ServiceNameType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ServiceType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.StatusCodeType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.StringconstantType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.TargetType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplateLiteralType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.WsdlType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Property
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
Sets the value of the value property.
setValue(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.StringConstantConfig
Sets the value of the value property.
setVersion(String) - Method in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
Sets the value of the version property.
setVersion(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArtifactType
Sets the value of the version property.
setVersion(String) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Sets the value of the version property.
setVersion(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
Sets the value of the version property.
setVersion(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Raven
Sets the value of the version property.
setVersion(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Workflow
Sets the value of the version property.
setWasAttributedTo(Set<URI>) - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
setWasChangedBy(VersionableResource.WasChangedBy) - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource
Sets the value of the wasChangedBy property.
setWasRevisionOf(Resource) - Method in class org.purl.wf4ever.roevo.jaxb.VersionableResource
Sets the value of the wasRevisionOf property.
setWfBundle(WorkflowBundle) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
setWorkers(BigInteger) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
Sets the value of the workers property.
setWorkflow(SeeAlsoType) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle.Workflow
Sets the value of the workflow property.
setWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
setWorkflowBundle(WorkflowBundle) - Method in class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
setWorkflowdescription(WorkflowDescriptionType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
Sets the value of the workflowdescription property.
setWorkflowIdentifier(Resource) - Method in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
Sets the value of the workflowIdentifier property.
setWorkflows(Set<Workflow>) - Method in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
setWrapped(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
Sets the value of the wrapped property.
setWrapped(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
Sets the value of the wrapped property.
setWrapped(Boolean) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
Sets the value of the wrapped property.
setWrappedTypeXML(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
Sets the value of the wrappedTypeXML property.
setWriters(List<WorkflowBundleWriter>) - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Sets the WorkflowBundleWriters.
setWsdl(WsdlType) - Method in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
Sets the value of the wsdl property.
setWsdl(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
Sets the value of the wsdl property.
setX509IssuerName(String) - Method in class org.w3._2000._09.xmldsig.X509IssuerSerialType
Sets the value of the x509IssuerName property.
setX509SerialNumber(BigInteger) - Method in class org.w3._2000._09.xmldsig.X509IssuerSerialType
Sets the value of the x509SerialNumber property.
setXmlDocument(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
Sets the value of the xmlDocument property.
setXpathExpression(String) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
Sets the value of the xpathExpression property.
setXpathNamespaceMap(XPathNamespaceMap) - Method in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
Sets the value of the xpathNamespaceMap property.
setY(byte[]) - Method in class org.w3._2000._09.xmldsig.DSAKeyValueType
Sets the value of the y property.
showActualUrlPort - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
showRedirectionOutputPort - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
showResponseHeadersPort - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
signature - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container.Signatures
 
signatureMethod - Variable in class org.w3._2000._09.xmldsig.SignedInfoType
 
SignatureMethodType - Class in org.w3._2000._09.xmldsig
Java class for SignatureMethodType complex type.
SignatureMethodType() - Constructor for class org.w3._2000._09.xmldsig.SignatureMethodType
 
SignaturePropertiesType - Class in org.w3._2000._09.xmldsig
Java class for SignaturePropertiesType complex type.
SignaturePropertiesType() - Constructor for class org.w3._2000._09.xmldsig.SignaturePropertiesType
 
signatureProperty - Variable in class org.w3._2000._09.xmldsig.SignaturePropertiesType
 
SignaturePropertyType - Class in org.w3._2000._09.xmldsig
Java class for SignaturePropertyType complex type.
SignaturePropertyType() - Constructor for class org.w3._2000._09.xmldsig.SignaturePropertyType
 
signatures - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
 
SignatureType - Class in org.w3._2000._09.xmldsig
Java class for SignatureType complex type.
SignatureType() - Constructor for class org.w3._2000._09.xmldsig.SignatureType
 
signatureValue - Variable in class org.w3._2000._09.xmldsig.SignatureType
 
SignatureValueType - Class in org.w3._2000._09.xmldsig
Java class for SignatureValueType complex type.
SignatureValueType() - Constructor for class org.w3._2000._09.xmldsig.SignatureValueType
 
signedInfo - Variable in class org.w3._2000._09.xmldsig.SignatureType
 
SignedInfoType - Class in org.w3._2000._09.xmldsig
Java class for SignedInfoType complex type.
SignedInfoType() - Constructor for class org.w3._2000._09.xmldsig.SignedInfoType
 
sink - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
 
sink - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
 
sink - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataLink
 
SinkType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for sinkType complex type.
SinkType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.SinkType
 
size() - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
skeletonDataflow(Dataflow) - Method in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
slicelist - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ExtensionsType
 
SlicelistType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for slicelistType complex type.
SlicelistType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.SlicelistType
 
SoaplabActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
SoaplabActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SoaplabActivityParser
 
SoaplabConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Configuration for the SoapLab activity.
SoaplabConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.SoaplabConfig
 
SoaplabExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
SoaplabExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.SoaplabExtensionParser
 
SoaplabwsdlType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for soaplabwsdlType complex type.
SoaplabwsdlType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
 
source - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.LinkType
 
source - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
 
source - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DataLink
 
SourceType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for sourceType complex type.
SourceType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.SourceType
 
SPKIDataType - Class in org.w3._2000._09.xmldsig
Java class for SPKIDataType complex type.
SPKIDataType() - Constructor for class org.w3._2000._09.xmldsig.SPKIDataType
 
spkiSexpAndAny - Variable in class org.w3._2000._09.xmldsig.SPKIDataType
 
splitProcessors(Collection<Processor>, Processor) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
SPLITTER - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLXMLSplitterParser
 
SpreadsheetActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
SpreadsheetActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.SpreadsheetActivityParser
 
SpreadsheetColumnNameEntry - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for SpreadsheetColumnNameEntry complex type.
SpreadsheetColumnNameEntry() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNameEntry
 
SpreadsheetColumnNames - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for SpreadsheetColumnNames complex type.
SpreadsheetColumnNames() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNames
 
SpreadsheetEmptyCellPolicy - Enum in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for SpreadsheetEmptyCellPolicy.
SpreadsheetExcludes - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for SpreadsheetExcludes complex type.
SpreadsheetExcludes() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetExcludes
 
SpreadsheetImportConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for SpreadsheetImportConfig complex type.
SpreadsheetImportConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetImportConfig
 
SpreadsheetRange - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for SpreadsheetRange complex type.
SpreadsheetRange() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
 
StandardWSDLSecurityProfile - Enum in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for StandardWSDLSecurityProfile.
start - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetRange
 
state - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionType
 
statechange - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ActionType
 
StatechangeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for statechangeType complex type.
StatechangeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.StatechangeType
 
StaticInputs - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for StaticInputs complex type.
StaticInputs() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.StaticInputs
 
staticInputs - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
Status - Enum in uk.org.taverna.scufl2.validation
 
StatusCodeType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for statusCodeType complex type.
StatusCodeType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.StatusCodeType
 
strategy - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Iteration
 
string - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityInputs.Entry
 
string - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ActivityPortDefinitionBean.MimeTypes
 
string - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterNames
 
string - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterTypes
 
string - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
 
string - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BioMobyEntry
 
string - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Dependencies
 
string - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Entry
 
string - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.LocalDependencies
 
string - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetColumnNameEntry
 
StringConstantActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
StringConstantActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.StringConstantActivityParser
 
StringConstantConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for StringConstantConfig complex type.
StringConstantConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.StringConstantConfig
 
StringConstantExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
StringConstantExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.StringConstantExtensionParser
 
StringconstantType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for stringconstantType complex type.
StringconstantType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.StringconstantType
 
StructuralValidationListener - Interface in uk.org.taverna.scufl2.validation.structural
 
StructuralValidator - Class in uk.org.taverna.scufl2.validation.structural
 
StructuralValidator() - Constructor for class uk.org.taverna.scufl2.validation.structural.StructuralValidator
 
StructureReader - Class in uk.org.taverna.scufl2.api.io.structure
A WorkflowBundleReader that reads a WorkflowBundle in Scufl2 Structure format.
StructureReader() - Constructor for class uk.org.taverna.scufl2.api.io.structure.StructureReader
 
StructureReader.Level - Enum in uk.org.taverna.scufl2.api.io.structure
 
StructureWriter - Class in uk.org.taverna.scufl2.api.io.structure
A WorkflowBundleWriter that writes a WorkflowBundle in Scufl2 Structure format.
StructureWriter() - Constructor for class uk.org.taverna.scufl2.api.io.structure.StructureWriter
 
SubClassOf - Class in org.w3._2000._01.rdf_schema
Java class for anonymous complex type.
SubClassOf() - Constructor for class org.w3._2000._01.rdf_schema.SubClassOf
 
SubPropertyOf - Class in org.w3._2000._01.rdf_schema
Java class for anonymous complex type.
SubPropertyOf() - Constructor for class org.w3._2000._01.rdf_schema.SubPropertyOf
 
subSet(T, T) - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
symanticType - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
 
symanticType - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
 
symanticType - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean
 
syntactictype - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
 
syntactictype - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
 
syntacticType - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.InputPortType
 
syntacticType - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.OutputPortType
 
syntacticType - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
 
syntacticType - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
 

T

T2FlowParser - Class in uk.org.taverna.scufl2.translator.t2flow
 
T2FlowParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
T2FlowParser.Configures - Enum in uk.org.taverna.scufl2.translator.t2flow
 
t2flowParserURI - Static variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
T2FlowReader - Class in uk.org.taverna.scufl2.translator.t2flow
 
T2FlowReader() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.T2FlowReader
 
T2Parser - Interface in uk.org.taverna.scufl2.translator.t2flow
 
t2Parsers - Variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
tag - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
 
tag - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
 
tags - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
tailSet(T) - Method in class uk.org.taverna.scufl2.api.common.NamedSet
 
target - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Relationship
 
target - Variable in class org.w3._2000._09.xmldsig.SignaturePropertyType
 
target - Variable in class org.w3._2001._04.xmlenc.EncryptionPropertyType
 
target - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ActionType
 
target - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionType
 
target - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Condition
 
TargetType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for targetType complex type.
TargetType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.TargetType
 
tempFile - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
 
tempFile - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputUser
 
template - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
templateLiteralOrTemplatePortReference - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplateType
 
TemplateLiteralType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for templateLiteralType complex type.
TemplateLiteralType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplateLiteralType
 
TemplatePortReferenceType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for templatePortReferenceType complex type.
TemplatePortReferenceType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplatePortReferenceType
 
TemplateType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for templateType complex type.
TemplateType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplateType
 
testLocal - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
TEXT_VND_TAVERNA_SCUFL2_STRUCTURE - Static variable in class uk.org.taverna.scufl2.api.io.structure.StructureReader
 
title - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
 
to - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.StatechangeType
 
to - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Mapping
 
TopIterationNode - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for TopIterationNode complex type.
TopIterationNode() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.TopIterationNode
 
toString() - Method in class uk.org.taverna.scufl2.api.activity.Activity
 
toString() - Method in class uk.org.taverna.scufl2.api.annotation.Revision
 
toString() - Method in class uk.org.taverna.scufl2.api.common.AbstractNamed
 
toString() - Method in class uk.org.taverna.scufl2.api.core.BlockingControlLink
 
toString() - Method in class uk.org.taverna.scufl2.api.core.DataLink
 
toString() - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStack
 
toString() - Method in class uk.org.taverna.scufl2.api.dispatchstack.DispatchStackLayer
 
toString() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.CrossProduct
 
toString() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.DotProduct
 
toString() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.IterationStrategyStack
 
toString() - Method in class uk.org.taverna.scufl2.api.iterationstrategy.PortNode
 
toString() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorBinding
 
toString() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorInputPortBinding
 
toString() - Method in class uk.org.taverna.scufl2.api.profiles.ProcessorOutputPortBinding
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.report.EmptyIterationStrategyTopNodeProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.report.IncompatibleGranularDepthProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.report.MismatchConfigurableTypeProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.report.NegativeValueProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.report.NonAbsoluteURIProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.report.NullFieldProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.report.OutOfScopeValueProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.report.PortMentionedTwiceProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.report.PortMissingFromIterationStrategyStackProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.report.WrongParentProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.EmptyIterationStrategyTopNodeProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.IncompatibleGranularDepthProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.MismatchConfigurableTypeProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NegativeValueProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NonAbsoluteURIProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.NullFieldProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.OutOfScopeValueProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.PortMentionedTwiceProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.PortMissingFromIterationStrategyStackProblem
 
toString() - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener.WrongParentProblem
 
transform - Variable in class org.w3._2000._09.xmldsig.TransformsType
 
transform - Variable in class org.w3._2001._04.xmlenc.TransformsType
 
transform(OdfPackage, String, String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
Do XSL-Transformation on content contained in package
transform(OdfPackage, String, Source, String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
Do XSL-Transformation on content contained in package
transform(OdfPackage, String, Source, File) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
Do XSL-Transformation on content contained in package
transform(OdfPackage, String, String) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
Do XSL-Transformation on content contained in package insert result back to package
transform(OdfPackage, String, File, File) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
Do XSL-Transformation on content contained in package
transform(OdfPackage, String, File) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
Do XSL-Transformation on content contained in package insert result back to package
transform(OdfPackage, String, Source, Result) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
Do XSL-Transformation on content contained in package
transform(OdfPackage, String, Templates, Result) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
Does an XSL-Transformation on content contained in package.

There are three default parameteres provided to the transformation: There are three default parameteres provided to the transformation: sourceURL: the URL of the source directory sourceBaseURL: baseURL of the source file (the package).
transform(OdfPackage, String, Templates) - Method in class uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfXMLHelper
Do XSL-Transformation on content contained in package and insert result back to package
transforms - Variable in class org.w3._2000._09.xmldsig.ReferenceType
 
transforms - Variable in class org.w3._2000._09.xmldsig.RetrievalMethodType
 
transforms - Variable in class org.w3._2001._04.xmlenc.CipherReferenceType
 
TransformsType - Class in org.w3._2000._09.xmldsig
Java class for TransformsType complex type.
TransformsType() - Constructor for class org.w3._2000._09.xmldsig.TransformsType
 
TransformsType - Class in org.w3._2001._04.xmlenc
Java class for TransformsType complex type.
TransformsType() - Constructor for class org.w3._2001._04.xmlenc.TransformsType
 
TransformType - Class in org.w3._2000._09.xmldsig
Java class for TransformType complex type.
TransformType() - Constructor for class org.w3._2000._09.xmldsig.TransformType
 
type - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Relationship
 
type - Variable in class org.purl.wf4ever.roevo.jaxb.ChangeSpecification
 
Type - Class in org.w3._1999._02._22_rdf_syntax_ns
Java class for anonymous complex type.
Type() - Constructor for class org.w3._1999._02._22_rdf_syntax_ns.Type
 
type - Variable in class org.w3._2000._09.xmldsig.ReferenceType
 
type - Variable in class org.w3._2000._09.xmldsig.RetrievalMethodType
 
type - Variable in class org.w3._2001._04.xmlenc.EncryptedType
 
type - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Activity
 
type - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Configuration
 
type - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStack
 
type - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DispatchStackLayer
 
type - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ApiConsumerParameterType
 
type - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
 
type - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Link
 
Typed - Interface in uk.org.taverna.scufl2.api.common
A typed WorkflowBean.
typename - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
 
typename - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
 
typename - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
 

U

UCFPackage - Class in uk.org.taverna.scufl2.ucfpackage
 
UCFPackage() - Constructor for class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
UCFPackage(File) - Constructor for class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
UCFPackage(InputStream) - Constructor for class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
UCFPackage.ResourceEntry - Class in uk.org.taverna.scufl2.ucfpackage
 
UCFPackage.ResourceEntry(OdfFileEntry) - Constructor for class uk.org.taverna.scufl2.ucfpackage.UCFPackage.ResourceEntry
 
uk.org.taverna.scufl2.api - package uk.org.taverna.scufl2.api
Scufl2 Workflow language API
uk.org.taverna.scufl2.api.activity - package uk.org.taverna.scufl2.api.activity
 
uk.org.taverna.scufl2.api.annotation - package uk.org.taverna.scufl2.api.annotation
Common annotations
uk.org.taverna.scufl2.api.common - package uk.org.taverna.scufl2.api.common
 
uk.org.taverna.scufl2.api.configurations - package uk.org.taverna.scufl2.api.configurations
 
uk.org.taverna.scufl2.api.container - package uk.org.taverna.scufl2.api.container
 
uk.org.taverna.scufl2.api.core - package uk.org.taverna.scufl2.api.core
 
uk.org.taverna.scufl2.api.dispatchstack - package uk.org.taverna.scufl2.api.dispatchstack
 
uk.org.taverna.scufl2.api.impl - package uk.org.taverna.scufl2.api.impl
 
uk.org.taverna.scufl2.api.io - package uk.org.taverna.scufl2.api.io
 
uk.org.taverna.scufl2.api.io.structure - package uk.org.taverna.scufl2.api.io.structure
 
uk.org.taverna.scufl2.api.iterationstrategy - package uk.org.taverna.scufl2.api.iterationstrategy
 
uk.org.taverna.scufl2.api.port - package uk.org.taverna.scufl2.api.port
 
uk.org.taverna.scufl2.api.profiles - package uk.org.taverna.scufl2.api.profiles
 
uk.org.taverna.scufl2.api.reference - package uk.org.taverna.scufl2.api.reference
 
uk.org.taverna.scufl2.rdfxml - package uk.org.taverna.scufl2.rdfxml
 
uk.org.taverna.scufl2.rdfxml.impl - package uk.org.taverna.scufl2.rdfxml.impl
 
uk.org.taverna.scufl2.rdfxml.jaxb - package uk.org.taverna.scufl2.rdfxml.jaxb
 
uk.org.taverna.scufl2.translator.scufl - package uk.org.taverna.scufl2.translator.scufl
 
uk.org.taverna.scufl2.translator.scufl.processorelement - package uk.org.taverna.scufl2.translator.scufl.processorelement
 
uk.org.taverna.scufl2.translator.t2flow - package uk.org.taverna.scufl2.translator.t2flow
 
uk.org.taverna.scufl2.translator.t2flow.defaultactivities - package uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack - package uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
 
uk.org.taverna.scufl2.translator.t2flow.t23activities - package uk.org.taverna.scufl2.translator.t2flow.t23activities
 
uk.org.taverna.scufl2.ucfpackage - package uk.org.taverna.scufl2.ucfpackage
 
uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg - package uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg
 
uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest - package uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest
 
uk.org.taverna.scufl2.validation - package uk.org.taverna.scufl2.validation
 
uk.org.taverna.scufl2.validation.correctness - package uk.org.taverna.scufl2.validation.correctness
 
uk.org.taverna.scufl2.validation.correctness.report - package uk.org.taverna.scufl2.validation.correctness.report
 
uk.org.taverna.scufl2.validation.structural - package uk.org.taverna.scufl2.validation.structural
 
uk.org.taverna.scufl2.validation.structural.report - package uk.org.taverna.scufl2.validation.structural.report
 
uk.org.taverna.scufl2.xml.scufl.jaxb - package uk.org.taverna.scufl2.xml.scufl.jaxb
 
uk.org.taverna.scufl2.xml.t2flow.jaxb - package uk.org.taverna.scufl2.xml.t2flow.jaxb
 
unbounded - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
 
unbounded - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
 
unbounded - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
 
unmarshallConfig(T2FlowParser, ConfigBean, String, Class<ConfigType>) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.AbstractActivityParser
 
unmarshallElement(T2FlowParser, Element, Class<ConfigType>) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.AbstractActivityParser
 
unmarshaller - Variable in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
unmarshaller - Variable in class uk.org.taverna.scufl2.translator.scufl.ScuflParser
 
unmarshaller - Variable in class uk.org.taverna.scufl2.translator.t2flow.T2FlowParser
 
unmarshallXml(T2FlowParser, String, Class<ConfigType>) - Method in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.AbstractActivityParser
 
unrecognizedIterationStrategyNode(IterationStrategyNode) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
unrecognizedIterationStrategyNode(IterationStrategyNode) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
unrecognizedIterationStrategyNode(IterationStrategyNode) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
unrecognizedIterationStrategyNode(IterationStrategyNode) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
UnrecognizedIterationStrategyNodeProblem - Class in uk.org.taverna.scufl2.validation.structural.report
 
UnrecognizedIterationStrategyNodeProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.structural.report.UnrecognizedIterationStrategyNodeProblem
 
unresolvedOutput(OutputWorkflowPort) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
unresolvedOutput(OutputWorkflowPort) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
unresolvedOutput(OutputWorkflowPort) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
unresolvedOutput(OutputWorkflowPort) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
UnresolvedOutputProblem - Class in uk.org.taverna.scufl2.validation.structural.report
 
UnresolvedOutputProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.structural.report.UnresolvedOutputProblem
 
unresolvedProcessorAdded(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.DefaultStructuralValidationListener
 
unresolvedProcessorAdded(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.report.ReportStructuralValidationListener
 
unresolvedProcessorAdded(Processor) - Method in class uk.org.taverna.scufl2.validation.structural.ReportStructuralValidationListener
 
unresolvedProcessorAdded(Processor) - Method in interface uk.org.taverna.scufl2.validation.structural.StructuralValidationListener
 
UnresolvedProcessorProblem - Class in uk.org.taverna.scufl2.validation.structural.report
 
UnresolvedProcessorProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.structural.report.UnresolvedProcessorProblem
 
unsetRootFile(String) - Method in class uk.org.taverna.scufl2.ucfpackage.UCFPackage
 
untilFinished - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Blocking
 
updateBindingByMatchingPorts(ProcessorBinding) - Method in class uk.org.taverna.scufl2.api.common.Scufl2Tools
 
updateWorkflowIdentifier() - Method in class uk.org.taverna.scufl2.api.core.Workflow
Updates the workflow identifier.
uri - Variable in class org.w3._2000._09.xmldsig.ReferenceType
 
uri - Variable in class org.w3._2000._09.xmldsig.RetrievalMethodType
 
uri - Variable in class org.w3._2001._04.xmlenc.CipherReferenceType
 
uri - Variable in class org.w3._2001._04.xmlenc.ReferenceType
 
uriForBean(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.URITools
 
URITools - Class in uk.org.taverna.scufl2.api.common
Utility methods for dealing with URIs.
URITools() - Constructor for class uk.org.taverna.scufl2.api.common.URITools
 
uriTools - Variable in class uk.org.taverna.scufl2.rdfxml.AbstractParser
 
url - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic
 
urlSignature - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RESTConfig
 
UsecaseConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for UsecaseConfig complex type.
UsecaseConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
 
useCaseDescription - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ExternalToolConfig
 
UsecaseDescription - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for UsecaseDescription complex type.
UsecaseDescription() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
usecaseid - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseConfig
 
usecaseid - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
username - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellType
 
username - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellConnection
 

V

ValidationException - Exception in uk.org.taverna.scufl2.validation
 
ValidationException(String) - Constructor for exception uk.org.taverna.scufl2.validation.ValidationException
 
ValidationProblem - Class in uk.org.taverna.scufl2.validation
 
ValidationProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.ValidationProblem
 
validatorState - Variable in class uk.org.taverna.scufl2.validation.structural.StructuralValidator
 
ValidatorState - Class in uk.org.taverna.scufl2.validation.structural
 
ValidatorState() - Constructor for class uk.org.taverna.scufl2.validation.structural.ValidatorState
 
validFilename(String) - Method in class uk.org.taverna.scufl2.api.common.URITools
 
validReturnCodes - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.UsecaseDescription
 
value - Variable in class org.w3._2000._09.xmldsig.SignatureValueType
 
value - Variable in class org.w3.prov.jaxb.GeneratedAtTime
 
value - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.DataLink.MergePosition
 
value - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.GranularPortDepth
 
value - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.PortDepth
 
value - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.PortNode.DesiredDepth
 
value - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.ProcessorBinding.ActivityPosition
 
value - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Required
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArticleNameType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.AuthorityNameType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshellinputType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BeanshelloutputType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BiomobyParameterType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ConditionStateType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DatatypeType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DefaultType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DescriptionType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.EndpointType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.HostType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.InputPortType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.JarfileType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MapType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MimeTypeType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MobyEndpointType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.NodeType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.OperationType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.OutputPortType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.PortType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RepositoryType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellInputPortType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.RshellOutputPortType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScriptvalueType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SemanticTypeType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ServiceNameType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ServiceType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.SoaplabwsdlType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.StatusCodeType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.StringconstantType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.TargetType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.TemplateLiteralType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
 
value - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.WsdlType
 
value() - Method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.ClassLoaderSharing
 
value - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.DependencyElement
 
value() - Method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.Encoding
 
value() - Method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.LinkType
 
value() - Method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.OutputFormat
 
value - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Property
 
value() - Method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.Role
 
value - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.RShellSymanticType.RShellPortSymanticTypeBean.SymanticType
 
value - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ScriptInputStatic.Content
 
value() - Method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetEmptyCellPolicy
 
value() - Method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.StandardWSDLSecurityProfile
 
value - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.StringConstantConfig
 
valueOf(String) - Static method in enum uk.org.taverna.scufl2.api.io.structure.StructureReader.Level
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.org.taverna.scufl2.translator.t2flow.T2FlowParser.Configures
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage.OdfFile
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.org.taverna.scufl2.validation.Status
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.ClassLoaderSharing
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.Encoding
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.LinkType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.OutputFormat
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.Role
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetEmptyCellPolicy
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.StandardWSDLSecurityProfile
Returns the enum constant of this type with the specified name.
values() - Static method in enum uk.org.taverna.scufl2.api.io.structure.StructureReader.Level
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.org.taverna.scufl2.translator.t2flow.T2FlowParser.Configures
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.org.taverna.scufl2.ucfpackage.impl.odfdom.pkg.OdfPackage.OdfFile
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.org.taverna.scufl2.validation.Status
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.ClassLoaderSharing
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.Encoding
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.LinkType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.OutputFormat
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.Role
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.SpreadsheetEmptyCellPolicy
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.org.taverna.scufl2.xml.t2flow.jaxb.StandardWSDLSecurityProfile
Returns an array containing the constants of this enum type, in the order they are declared.
version - Variable in class org.oasis_open.names.tc.opendocument.xmlns.container.Container
 
version - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArtifactType
 
version - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
 
version - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.BasicArtifact
 
version - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Raven
 
version - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.Workflow
 
VersionableResource - Class in org.purl.wf4ever.roevo.jaxb
Java class for anonymous complex type.
VersionableResource() - Constructor for class org.purl.wf4ever.roevo.jaxb.VersionableResource
 
VersionableResource.WasChangedBy - Class in org.purl.wf4ever.roevo.jaxb
Java class for anonymous complex type.
VersionableResource.WasChangedBy() - Constructor for class org.purl.wf4ever.roevo.jaxb.VersionableResource.WasChangedBy
 
visit(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.AbstractCloneable.CopyVisitor
 
visit(WorkflowBean) - Method in interface uk.org.taverna.scufl2.api.common.Visitor
Called by WorkflowBean.accept(Visitor) when the visited bean is a leaf node.
visit(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.Visitor.VisitorAdapter
 
visit() - Method in class uk.org.taverna.scufl2.api.common.Visitor.VisitorWithPath
Similar to Visitor.visit(WorkflowBean) - but called for every node, even if it can have children.
visit(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.Visitor.VisitorWithPath
Final to maintain current path.
visit(WorkflowBean) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer.ProfileSerialisationVisitor
 
visit(WorkflowBean) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer.WorkflowSerialisationVisitor
 
visit() - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitAbstractDepthPort(AbstractDepthPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitAbstractDepthPort(AbstractDepthPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitAbstractDepthPort(AbstractDepthPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitAbstractGranularDepthPort(AbstractGranularDepthPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitAbstractGranularDepthPort(AbstractGranularDepthPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitAbstractGranularDepthPort(AbstractGranularDepthPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitActivity(Activity) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitActivity(Activity) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitActivity(Activity) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitActivityPort(ActivityPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitActivityPort(ActivityPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitActivityPort(ActivityPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitBlockingControlLink(BlockingControlLink) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitBlockingControlLink(BlockingControlLink) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitBlockingControlLink(BlockingControlLink) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitChild(Child) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitChild(Child) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitChild(Child) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitConfigurable(Configurable) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitConfigurable(Configurable) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitConfigurable(Configurable) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitConfiguration(Configuration) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitConfiguration(Configuration) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitConfiguration(Configuration) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitControlLink(ControlLink) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitControlLink(ControlLink) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitControlLink(ControlLink) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitCrossProduct(CrossProduct) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitCrossProduct(CrossProduct) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitCrossProduct(CrossProduct) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitDataLink(DataLink) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitDataLink(DataLink) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitDataLink(DataLink) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitDispatchStack(DispatchStack) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitDispatchStack(DispatchStack) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitDispatchStack(DispatchStack) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitDispatchStackLayer(DispatchStackLayer) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitDispatchStackLayer(DispatchStackLayer) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitDispatchStackLayer(DispatchStackLayer) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitDotProduct(DotProduct) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitDotProduct(DotProduct) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitDotProduct(DotProduct) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitEnter(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.AbstractCloneable.CopyVisitor
 
visitEnter(WorkflowBean) - Method in interface uk.org.taverna.scufl2.api.common.Visitor
Called by WorkflowBean.accept(Visitor) when first visiting a bean which potentially has children.
visitEnter(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.Visitor.VisitorAdapter
 
visitEnter(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.Visitor.VisitorWithPath
Final to maintain current path.
visitEnter(WorkflowBean) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer.ProfileSerialisationVisitor
 
visitEnter(WorkflowBean) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer.WorkflowSerialisationVisitor
 
visitInputActivityPort(InputActivityPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitInputActivityPort(InputActivityPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitInputActivityPort(InputActivityPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitInputPort(InputPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitInputPort(InputPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitInputPort(InputPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitInputProcessorPort(InputProcessorPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitInputProcessorPort(InputProcessorPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitInputProcessorPort(InputProcessorPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitInputWorkflowPort(InputWorkflowPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitInputWorkflowPort(InputWorkflowPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitInputWorkflowPort(InputWorkflowPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitIterationStrategyNode(IterationStrategyNode) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitIterationStrategyNode(IterationStrategyNode) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitIterationStrategyNode(IterationStrategyNode) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitIterationStrategyParent(IterationStrategyParent) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitIterationStrategyParent(IterationStrategyParent) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitIterationStrategyParent(IterationStrategyParent) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitIterationStrategyStack(IterationStrategyStack) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitIterationStrategyStack(IterationStrategyStack) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitIterationStrategyStack(IterationStrategyStack) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitIterationStrategyTopNode(IterationStrategyTopNode) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitIterationStrategyTopNode(IterationStrategyTopNode) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitIterationStrategyTopNode(IterationStrategyTopNode) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitLeave(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.AbstractCloneable.CopyVisitor
 
visitLeave(WorkflowBean) - Method in interface uk.org.taverna.scufl2.api.common.Visitor
Called by WorkflowBean.accept(Visitor) before leaving a bean previously visited with Visitor.visitEnter(WorkflowBean).
visitLeave(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.Visitor.VisitorAdapter
 
visitLeave() - Method in class uk.org.taverna.scufl2.api.common.Visitor.VisitorWithPath
Override this method to be informed when leaving a node.
visitLeave(WorkflowBean) - Method in class uk.org.taverna.scufl2.api.common.Visitor.VisitorWithPath
Final to maintain current path.
visitLeave(WorkflowBean) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer.ProfileSerialisationVisitor
 
visitLeave(WorkflowBean) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer.WorkflowSerialisationVisitor
 
visitNamed(Named) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitNamed(Named) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitNamed(Named) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
Visitor - Interface in uk.org.taverna.scufl2.api.common
Visitor which can inspect a WorkflowBean.
Visitor.VisitorAdapter - Class in uk.org.taverna.scufl2.api.common
 
Visitor.VisitorAdapter() - Constructor for class uk.org.taverna.scufl2.api.common.Visitor.VisitorAdapter
 
Visitor.VisitorWithPath - Class in uk.org.taverna.scufl2.api.common
 
Visitor.VisitorWithPath() - Constructor for class uk.org.taverna.scufl2.api.common.Visitor.VisitorWithPath
 
visitOutputActivityPort(OutputActivityPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitOutputActivityPort(OutputActivityPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitOutputActivityPort(OutputActivityPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitOutputPort(OutputPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitOutputPort(OutputPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitOutputPort(OutputPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitOutputProcessorPort(OutputProcessorPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitOutputProcessorPort(OutputProcessorPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitOutputProcessorPort(OutputProcessorPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitOutputWorkflowPort(OutputWorkflowPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitOutputWorkflowPort(OutputWorkflowPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitOutputWorkflowPort(OutputWorkflowPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitPort(Port) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitPort(Port) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitPort(Port) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitPorted(Ported) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitPorted(Ported) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitPorted(Ported) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitPortNode(PortNode) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitPortNode(PortNode) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitPortNode(PortNode) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitProcessor(Processor) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitProcessor(Processor) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitProcessor(Processor) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitProcessorBinding(ProcessorBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitProcessorBinding(ProcessorBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitProcessorBinding(ProcessorBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitProcessorInputPortBinding(ProcessorInputPortBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitProcessorInputPortBinding(ProcessorInputPortBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitProcessorInputPortBinding(ProcessorInputPortBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitProcessorOutputPortBinding(ProcessorOutputPortBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitProcessorOutputPortBinding(ProcessorOutputPortBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitProcessorOutputPortBinding(ProcessorOutputPortBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitProcessorPort(ProcessorPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitProcessorPort(ProcessorPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitProcessorPort(ProcessorPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitProcessorPortBinding(ProcessorPortBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitProcessorPortBinding(ProcessorPortBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitProcessorPortBinding(ProcessorPortBinding) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitProfile(Profile) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitProfile(Profile) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitProfile(Profile) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitReceiverPort(ReceiverPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitReceiverPort(ReceiverPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitReceiverPort(ReceiverPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitRoot(Root) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitRoot(Root) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitRoot(Root) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitSenderPort(SenderPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitSenderPort(SenderPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitSenderPort(SenderPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitTyped(Typed) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitTyped(Typed) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitTyped(Typed) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitWorkflow(Workflow) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitWorkflowBundle(WorkflowBundle) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitWorkflowBundle(WorkflowBundle) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitWorkflowBundle(WorkflowBundle) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 
visitWorkflowPort(WorkflowPort) - Method in class uk.org.taverna.scufl2.validation.correctness.CorrectnessVisitor
 
visitWorkflowPort(WorkflowPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultDispatchingVisitor
 
visitWorkflowPort(WorkflowPort) - Method in class uk.org.taverna.scufl2.validation.correctness.DispatchingVisitor
 

W

wasAttributedTo - Variable in class org.purl.wf4ever.roevo.jaxb.VersionableResource
 
wasChangedBy - Variable in class org.purl.wf4ever.roevo.jaxb.VersionableResource
 
wasRevisionOf - Variable in class org.purl.wf4ever.roevo.jaxb.VersionableResource
 
workers - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ProcessorType
 
Workflow - Class in uk.org.taverna.scufl2.api.core
A Workflow is a set of Processors and DataLinks between the Processors.
Workflow() - Constructor for class uk.org.taverna.scufl2.api.core.Workflow
Constructs a Workflow with a name based on a random UUID.
Workflow - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Workflow() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
 
workflow - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
 
workflow - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle.Workflow
 
WORKFLOW - Static variable in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
Workflow - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
The container of a workflow definition.
Workflow() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.Workflow
 
Workflow.InputWorkflowPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Workflow.InputWorkflowPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.InputWorkflowPort
 
Workflow.OutputWorkflowPort - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Workflow.OutputWorkflowPort() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.OutputWorkflowPort
 
Workflow.Processor - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
Workflow.Processor() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow.Processor
 
WORKFLOW_BUNDLE_RDF - Static variable in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
WORKFLOW_BUNDLE_ROOT - Static variable in class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
WORKFLOW_ROOT - Static variable in class uk.org.taverna.scufl2.api.core.Workflow
 
WorkflowBean - Interface in uk.org.taverna.scufl2.api.common
The top level interface for all objects in a workflow.
WorkflowBeanReport - Interface in uk.org.taverna.scufl2.validation
 
WorkflowBundle - Class in uk.org.taverna.scufl2.api.container
A workflow bundle is a collection of workflows, profiles and their annotations.
WorkflowBundle() - Constructor for class uk.org.taverna.scufl2.api.container.WorkflowBundle
 
WorkflowBundle - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
WorkflowBundle() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle
 
WorkflowBundle.Profile - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
WorkflowBundle.Profile() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle.Profile
 
WorkflowBundle.Workflow - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for anonymous complex type.
WorkflowBundle.Workflow() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundle.Workflow
 
workflowBundleDoc(OutputStream, URI) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
WorkflowBundleDocument - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for WorkflowBundleDocument complex type.
WorkflowBundleDocument() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowBundleDocument
 
WorkflowBundleIO - Class in uk.org.taverna.scufl2.api.io
Utility class for reading and writing WorkflowBundles.
WorkflowBundleIO() - Constructor for class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
 
WorkflowBundleParser - Class in uk.org.taverna.scufl2.rdfxml
 
WorkflowBundleParser() - Constructor for class uk.org.taverna.scufl2.rdfxml.WorkflowBundleParser
 
WorkflowBundleReader - Interface in uk.org.taverna.scufl2.api.io
A reader for WorkflowBundles.
WorkflowBundleWriter - Interface in uk.org.taverna.scufl2.api.io
A writer for WorkflowBundles.
workflowdescription - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ScuflType
 
WorkflowDescriptionType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for workflowDescriptionType complex type.
WorkflowDescriptionType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.WorkflowDescriptionType
 
workflowDoc(OutputStream, Workflow, URI) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLSerializer
 
WorkflowDocument - Class in uk.org.taverna.scufl2.rdfxml.jaxb
Java class for WorkflowDocument complex type.
WorkflowDocument() - Constructor for class uk.org.taverna.scufl2.rdfxml.jaxb.WorkflowDocument
 
workflowIdentifier - Variable in class uk.org.taverna.scufl2.rdfxml.jaxb.Workflow
 
WorkflowParser - Class in uk.org.taverna.scufl2.rdfxml
 
WorkflowParser() - Constructor for class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
WorkflowParser(ThreadLocal<ParserState>) - Constructor for class uk.org.taverna.scufl2.rdfxml.WorkflowParser
 
WorkflowPort - Interface in uk.org.taverna.scufl2.api.port
A Port that specifies the data consumed or produced by an Workflow.
wrapped - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArraytypeType
 
wrapped - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.BasetypeType
 
wrapped - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ComplextypeType
 
wrappedTypeXML - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
 
writeBundle(WorkflowBundle, File, String) - Method in class uk.org.taverna.scufl2.api.io.structure.StructureWriter
 
writeBundle(WorkflowBundle, OutputStream, String) - Method in class uk.org.taverna.scufl2.api.io.structure.StructureWriter
 
writeBundle(WorkflowBundle, File, String) - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Write a WorkflowBundle to a file with specified media type.
writeBundle(WorkflowBundle, OutputStream, String) - Method in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
Write a WorkflowBundle to a stream with specified media type.
writeBundle(WorkflowBundle, File, String) - Method in interface uk.org.taverna.scufl2.api.io.WorkflowBundleWriter
Writes a WorkflowBundle to a file with specified media type.
writeBundle(WorkflowBundle, OutputStream, String) - Method in interface uk.org.taverna.scufl2.api.io.WorkflowBundleWriter
Writes a WorkflowBundle to a stream with specified media type.
writeBundle(WorkflowBundle, File, String) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
writeBundle(WorkflowBundle, OutputStream, String) - Method in class uk.org.taverna.scufl2.rdfxml.RDFXMLWriter
 
WriterException - Exception in uk.org.taverna.scufl2.api.io
Thrown when there is a problem writing a WorkflowBundle
WriterException() - Constructor for exception uk.org.taverna.scufl2.api.io.WriterException
Constructs an exception with no message or cause.
WriterException(String) - Constructor for exception uk.org.taverna.scufl2.api.io.WriterException
Constructs an exception with the specified message and no cause.
WriterException(String, Throwable) - Constructor for exception uk.org.taverna.scufl2.api.io.WriterException
Constructs an exception with the specified message and cause.
WriterException(Throwable) - Constructor for exception uk.org.taverna.scufl2.api.io.WriterException
Constructs an exception with the specified cause and and the same message as the cause (if the cause is not null).
writersLoader - Variable in class uk.org.taverna.scufl2.api.io.WorkflowBundleIO
 
wrongParent(Child) - Method in interface uk.org.taverna.scufl2.validation.correctness.CorrectnessValidationListener
 
wrongParent(Child) - Method in class uk.org.taverna.scufl2.validation.correctness.DefaultCorrectnessValidationListener
 
wrongParent(Child) - Method in class uk.org.taverna.scufl2.validation.correctness.report.ReportCorrectnessValidationListener
 
wrongParent(Child) - Method in class uk.org.taverna.scufl2.validation.correctness.ReportCorrectnessValidationListener
 
WrongParentProblem - Class in uk.org.taverna.scufl2.validation.correctness.report
 
WrongParentProblem(WorkflowBean) - Constructor for class uk.org.taverna.scufl2.validation.correctness.report.WrongParentProblem
 
WSDL - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLActivityParser
 
wsdl - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.ArbitraryWsdlType
 
wsdl - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
 
WSDLActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
WSDLActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLActivityParser
 
WSDLConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Configuration for the WSDL activity.
WSDLConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.WSDLConfig
 
WsdlExtensionParser - Class in uk.org.taverna.scufl2.translator.scufl.processorelement
 
WsdlExtensionParser() - Constructor for class uk.org.taverna.scufl2.translator.scufl.processorelement.WsdlExtensionParser
 
WsdlType - Class in uk.org.taverna.scufl2.xml.scufl.jaxb
Java class for wsdlType complex type.
WsdlType() - Constructor for class uk.org.taverna.scufl2.xml.scufl.jaxb.WsdlType
 
WSDLXMLSplitterParser - Class in uk.org.taverna.scufl2.translator.t2flow.defaultactivities
 
WSDLXMLSplitterParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLXMLSplitterParser
 

X

X509DataType - Class in org.w3._2000._09.xmldsig
Java class for X509DataType complex type.
X509DataType() - Constructor for class org.w3._2000._09.xmldsig.X509DataType
 
x509IssuerName - Variable in class org.w3._2000._09.xmldsig.X509IssuerSerialType
 
x509IssuerSerialOrX509SKIOrX509SubjectName - Variable in class org.w3._2000._09.xmldsig.X509DataType
 
X509IssuerSerialType - Class in org.w3._2000._09.xmldsig
Java class for X509IssuerSerialType complex type.
X509IssuerSerialType() - Constructor for class org.w3._2000._09.xmldsig.X509IssuerSerialType
 
x509SerialNumber - Variable in class org.w3._2000._09.xmldsig.X509IssuerSerialType
 
XML_INPUT_SPLITTER - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLXMLSplitterParser
 
XML_OUTPUT_SPLITTER - Static variable in class uk.org.taverna.scufl2.translator.t2flow.defaultactivities.WSDLXMLSplitterParser
 
xmlDocument - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
 
XMLSplitterConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for XMLSplitterConfig complex type.
XMLSplitterConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.XMLSplitterConfig
 
XPathActivityParser - Class in uk.org.taverna.scufl2.translator.t2flow.t23activities
 
XPathActivityParser() - Constructor for class uk.org.taverna.scufl2.translator.t2flow.t23activities.XPathActivityParser
 
XPathConfig - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for XPathConfig complex type.
XPathConfig() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
 
xpathExpression - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
 
xpathNamespaceMap - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathConfig
 
XPathNamespaceMap - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for XPathNamespaceMap complex type.
XPathNamespaceMap() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathNamespaceMap
 
XPathNamespaceMap.List - Class in uk.org.taverna.scufl2.xml.t2flow.jaxb
Java class for anonymous complex type.
XPathNamespaceMap.List() - Constructor for class uk.org.taverna.scufl2.xml.t2flow.jaxb.XPathNamespaceMap.List
 

Y

y - Variable in class org.w3._2000._09.xmldsig.DSAKeyValueType
 

_

_default - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.DefaultsType
 
_int - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ApiConsumerParameterDimensions
 
_int - Variable in class uk.org.taverna.scufl2.xml.t2flow.jaxb.ReturnCodes
 
_static - Variable in class uk.org.taverna.scufl2.xml.scufl.jaxb.MethodType
 
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