Uses of Class
uk.org.taverna.scufl2.api.io.ReaderException

Packages that use ReaderException

Package	Description
uk.org.taverna.scufl2.api.io
uk.org.taverna.scufl2.api.io.structure
uk.org.taverna.scufl2.rdfxml
uk.org.taverna.scufl2.translator.scufl
uk.org.taverna.scufl2.translator.t2flow
uk.org.taverna.scufl2.translator.t2flow.defaultactivities
uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack
uk.org.taverna.scufl2.translator.t2flow.t23activities

Uses of ReaderException in uk.org.taverna.scufl2.api.io

Methods in uk.org.taverna.scufl2.api.io that throw ReaderException

Modifier and Type	Method and Description
WorkflowBundle	WorkflowBundleReader.readBundle(File bundleFile, String mediaType) Read a file containing a workflow bundle in the specified media type and return a WorkflowBundle.
WorkflowBundle	WorkflowBundleIO.readBundle(File bundleFile, String mediaType) Reads a file containing a workflow bundle in the specified media type and returns a WorkflowBundle.
WorkflowBundle	WorkflowBundleReader.readBundle(InputStream inputStream, String mediaType) Read a stream containing a workflow bundle in the specified media type and return a WorkflowBundle.
WorkflowBundle	WorkflowBundleIO.readBundle(InputStream inputStream, String mediaType) Reads a stream containing a workflow bundle in the specified media type and returns a WorkflowBundle.
WorkflowBundle	WorkflowBundleIO.readBundle(URL url, String mediaType) Reads a URL containing a workflow bundle in the specified media type and returns a WorkflowBundle.

Uses of ReaderException in uk.org.taverna.scufl2.api.io.structure

Methods in uk.org.taverna.scufl2.api.io.structure that throw ReaderException

Modifier and Type	Method and Description
protected WorkflowBundle	StructureReader.parse(InputStream is)
protected void	StructureReader.parseLine(String nextLine)
WorkflowBundle	StructureReader.readBundle(File bundleFile, String mediaType)
WorkflowBundle	StructureReader.readBundle(InputStream inputStream, String mediaType)

Uses of ReaderException in uk.org.taverna.scufl2.rdfxml

Methods in uk.org.taverna.scufl2.rdfxml that throw ReaderException

Modifier and Type	Method and Description
protected void	ProfileParser.parseConfiguration(Configuration original)
protected void	WorkflowParser.parseCrossDotOrPortNodeList(List<Object> nodeList)
protected void	WorkflowParser.parseCrossProduct(CrossProduct original)
protected void	WorkflowParser.parseDotProduct(DotProduct original)
protected void	ProfileParser.parseInputPortBinding(InputPortBinding original)
protected void	WorkflowParser.parseIterationStrategyStack(IterationStrategyStack original)
protected void	ProfileParser.parseOutputPortBinding(OutputPortBinding original)
protected void	WorkflowParser.parseProcessor(Processor processor)
protected void	ProfileParser.parseProcessorBinding(ProcessorBinding original)
protected void	WorkflowParser.parseProductOf(ProductOf productOf)
protected void	WorkflowParser.parseWorkflow(Workflow workflow, URI wfUri)
protected WorkflowBundle	WorkflowBundleParser.parseWorkflowBundle(WorkflowBundle wb, URI base)
WorkflowBundle	RDFXMLReader.readBundle(File bundleFile, String mediaType)
WorkflowBundle	RDFXMLReader.readBundle(InputStream inputStream, String mediaType)
protected void	ProfileParser.readProfile(URI profileUri, URI source)
protected void	ProfileParser.readProfile(URI profileUri, URI source, InputStream bundleStream)
Map<URI,Revision>	RevisionParser.readRevisionChain(InputStream revisionDocumentStream, URI base)
protected void	WorkflowParser.readWorkflow(URI wfUri, URI source)
WorkflowBundle	WorkflowBundleParser.readWorkflowBundle(UCFPackage ucfPackage, URI suggestedLocation)
protected <T extends WorkflowBean> T	AbstractParser.resolveBeanUri(String resource, Class<T> beanType)

Uses of ReaderException in uk.org.taverna.scufl2.translator.scufl

Methods in uk.org.taverna.scufl2.translator.scufl that throw ReaderException

Modifier and Type	Method and Description
WorkflowBundle	ScuflParser.parseScufl(File scuflFile)
WorkflowBundle	ScuflParser.parseScufl(InputStream scuflFile)
WorkflowBundle	ScuflParser.parseScufl(ScuflType wf)
WorkflowBundle	ScuflReader.readBundle(File bundleFile, String mediaType)
WorkflowBundle	ScuflReader.readBundle(InputStream inputStream, String mediaType)

Uses of ReaderException in uk.org.taverna.scufl2.translator.t2flow

Methods in uk.org.taverna.scufl2.translator.t2flow that throw ReaderException

Modifier and Type	Method and Description
protected ReceiverPort	T2FlowParser.findReceiverPort(Workflow wf, Link sink)
protected SenderPort	T2FlowParser.findSenderPort(Workflow wf, Link source)
protected Activity	T2FlowParser.parseActivity(Activity origActivity)
protected Activity	T2FlowParser.parseActivityAndAddToProfile(Activity origActivity)
protected void	T2FlowParser.parseActivityBinding(Activity origActivity, int activityPosition)
protected void	T2FlowParser.parseActivityInputMap(Map inputMap)
protected void	T2FlowParser.parseActivityOutputMap(Map outputMap)
void	T2FlowParser.parseAnnotations(WorkflowBean annotatedBean, Annotations annotations)
protected Configuration	T2FlowParser.parseConfiguration(ConfigBean configBean)
Configuration	T2Parser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
protected Configuration	T2FlowParser.parseConfigurationAndAddToProfile(ConfigBean configBean)
protected Workflow	T2FlowParser.parseDataflow(Dataflow df, Workflow wf)
protected Set<DataLink>	T2FlowParser.parseDatalinks(Datalinks origLinks)
protected void	T2FlowParser.parseDispatchStack(DispatchLayer dispatchLayer)
protected void	T2FlowParser.parseDispatchStack(DispatchStack dispatchStack)
protected Set<InputWorkflowPort>	T2FlowParser.parseInputPorts(AnnotatedGranularDepthPorts originalPorts)
protected IterationStrategyNode	T2FlowParser.parseIterationStrategyNode(IterationNode topNode)
protected IterationStrategyStack	T2FlowParser.parseIterationStrategyStack(IterationStrategyStack originalStack)
protected Set<OutputWorkflowPort>	T2FlowParser.parseOutputPorts(AnnotatedPorts originalPorts)
protected Set<Processor>	T2FlowParser.parseProcessors(Processors originalProcessors)
WorkflowBundle	T2FlowParser.parseT2Flow(File t2File)
WorkflowBundle	T2FlowParser.parseT2Flow(InputStream t2File)
WorkflowBundle	T2FlowParser.parseT2Flow(Workflow wf)
WorkflowBundle	T2FlowReader.readBundle(File bundleFile, String mediaType)
WorkflowBundle	T2FlowReader.readBundle(InputStream inputStream, String mediaType)

Uses of ReaderException in uk.org.taverna.scufl2.translator.t2flow.defaultactivities

Methods in uk.org.taverna.scufl2.translator.t2flow.defaultactivities that throw ReaderException

Modifier and Type	Method and Description
Configuration	BiomartActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	ApiConsomerActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	BeanshellActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	RshellActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	StringConstantActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	SpreadsheetActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	WSDLActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	SoaplabActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	WSDLXMLSplitterParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	DataflowActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
<ConfigType> ConfigType	AbstractActivityParser.unmarshallConfig(T2FlowParser t2FlowParser, ConfigBean configBean, String encoding, Class<ConfigType> configType)
<ConfigType> ConfigType	AbstractActivityParser.unmarshallElement(T2FlowParser t2FlowParser, Element element, Class<ConfigType> configType)
<ConfigType> ConfigType	AbstractActivityParser.unmarshallXml(T2FlowParser t2FlowParser, String xml, Class<ConfigType> configType)

Uses of ReaderException in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack

Methods in uk.org.taverna.scufl2.translator.t2flow.defaultdispatchstack that throw ReaderException

Modifier and Type	Method and Description
Activity	LoopParser.ConditionalActivityParser.parseActivity(Activity origActivity)
protected Configuration	LoopParser.ConditionalActivityParser.parseConfiguration(ConfigBean configBean)
Configuration	LoopParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	RetryParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	InvokeParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	FailoverParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	ErrorBounceParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	ParallelizeParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)

Uses of ReaderException in uk.org.taverna.scufl2.translator.t2flow.t23activities

Methods in uk.org.taverna.scufl2.translator.t2flow.t23activities that throw ReaderException

Modifier and Type	Method and Description
Configuration	XPathActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	ExternalToolActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)
Configuration	RESTActivityParser.parseConfiguration(T2FlowParser t2FlowParser, ConfigBean configBean, ParserState parserState)